| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,651,763 – 5,651,859 |
| Length | 96 |
| Max. P | 0.967642 |
| Location | 5,651,763 – 5,651,859 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 64.18 |
| Shannon entropy | 0.68260 |
| G+C content | 0.56699 |
| Mean single sequence MFE | -34.97 |
| Consensus MFE | -14.15 |
| Energy contribution | -12.81 |
| Covariance contribution | -1.34 |
| Combinations/Pair | 1.79 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5651763 96 + 23011544 GACGACGGCGGCGGUGGCAGUGGCAACAAUUAGCCGGGAGGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUCUGCGCUG- ((((..((((((((.((.(((.(((.......((((((((....)))))))).......((....))))).))).)))))))))))))).......- ( -47.10, z-score = -2.86, R) >droWil1.scaffold_180708 3950108 88 - 12563649 ------GGACAGGGUAAAAGUGGCAACAAUUAGCCAUGAGGAUAUUUCCGGCAUUUUAUGCUUCCGUUGUUGCUGCU--GCUGUGUCAUUACGCGG- ------.((((.(((...((..((((((((.(((.(((.(((....)))..))).....)))...))))))))..))--))).)))).........- ( -30.10, z-score = -2.18, R) >droSec1.super_5 3730552 96 + 5866729 GGCGACGGCAGCGGUGGCAGUGGCAACAAUUAGCCGGGAGGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUUUGCGCUG- ((((...(((((((.(((..((....))....((((((((....)))))))).......))).))))))).((......))))))...........- ( -42.20, z-score = -1.35, R) >droSim1.chr2L 5444874 96 + 22036055 GGCGACGGCGGCGGUGGCAGUGGCAACAAUUAGCCGGGAAGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUCUGCGCUU- .(((((((((((((.((.(((.(((.......((((((((....)))))))).......((....))))).))).)))))))).))))).))....- ( -49.10, z-score = -3.18, R) >droGri2.scaffold_15252 3161339 82 + 17193109 ---------GGCGGCGGCAGCGGCAACAAUUAGCCAUGAGCAUAUUUCCGGCAUUUUAUGUUUCCGUUGCAGUUUC---AUUACGCGACGUCGU--- ---------.(((((((((((((.((((....(((..(((.....))).)))......)))).))))))).((...---...))....))))))--- ( -25.90, z-score = -1.43, R) >droVir3.scaffold_12963 3640097 82 + 20206255 ---------GGCGGCGGCAGCGGCAACAAUUAGCCAUGAGCAUAUUUCCGGCAUUUUAUGUUUCCGCUGCAGUUUC---AUUACGCGGCGCCGG--- ---------((((.(((((((((.((((....(((..(((.....))).)))......)))).))))))).((...---...)).)).))))..--- ( -32.10, z-score = -2.24, R) >apiMel3.Group4 1642708 85 + 10796202 ---------AAGGGGGACGGUGUUUA-AAGCAUCGUAGCAUAAAAAUCCGGCUGUCCCAGAUUCUUCUUC--CUUUCUCGUCUCUCGGAUCCAUUGA ---------((((((((((((((...-..)))))..(((...........))))))))(((....))).)--)))((.((.....))))........ ( -18.30, z-score = 0.53, R) >consensus ______GG_GGCGGUGGCAGUGGCAACAAUUAGCCAGGAGGAUAUUUCCGGCAUUUCACGCUUCCGCUGCAGCUUCC_CGCCGCCCGUCUGCGCUG_ ..........(((((((.((((((........)))((((((............))))))))).)))))))........................... (-14.15 = -12.81 + -1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:36 2011