Locus 7929

Sequence ID dm3.chr3L
Location 18,643,592 – 18,643,674
Length 82
Max. P 0.891858
window10915

overview

Window 5

Location 18,643,592 – 18,643,674
Length 82
Sequences 4
Columns 82
Reading direction forward
Mean pairwise identity 83.54
Shannon entropy 0.27334
G+C content 0.45427
Mean single sequence MFE -19.44
Consensus MFE -14.53
Energy contribution -14.59
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -2.01
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.10
SVM RNA-class probability 0.891858
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 18643592 82 + 24543557
CGGGGGGCUUACCCUGGCAAACUUUAUAUUUUCUCUUAUUCUCACUCUGUGAUCCUGUAAACUCCGGUUUAAGCCUUCAAUU
..(((((((((..((((.....((((((...((.(.............).))...))))))..))))..))))))))).... ( -19.32, z-score =  -2.07, R)
>droEre2.scaffold_4784 10488751 70 - 25762168
--GGGGGCUUACCCUGGCAAACUUCAUAUCUUCCCU----------CUGUGAUCCUCCAAACUCCGGUCUAAGCCUUCAAUU
--(((((((((..((((......(((((........----------.)))))...........))))..))))))))).... ( -18.23, z-score =  -2.19, R)
>droYak2.chr3L 8781523 82 - 24197627
CAGGGGGCUUAGCCUGGCAAACUUUAUAGGUGUUCUCUUUCUCACUCUGUGAUCCCGUAAACUCCGGUCUAAGCCUUCAAUU
..((((((((((.((((...((.(((((((((..........))).))))))....)).....)))).)))))))))).... ( -26.00, z-score =  -3.09, R)
>droSec1.super_19 623713 82 + 1257711
CAGGGGGCUUACCCUAGCAAACUUUAUAUUUUCUCUCAUUCUCACUCUGUGAUCCUGUAAACUCCGGUUUAAGCCUUCAAUU
..(((((((((..(..(.....((((((...((.(.............).))...))))))..)..)..))))))))).... ( -14.22, z-score =  -0.70, R)
>consensus
CAGGGGGCUUACCCUGGCAAACUUUAUAUUUUCUCUCAUUCUCACUCUGUGAUCCUGUAAACUCCGGUCUAAGCCUUCAAUU
..(((((((((..((((......(((((...................)))))...........))))..))))))))).... (-14.53 = -14.59 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:11 2011