| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,637,342 – 18,637,436 |
| Length | 94 |
| Max. P | 0.580513 |
| Location | 18,637,342 – 18,637,436 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 96.19 |
| Shannon entropy | 0.06839 |
| G+C content | 0.44468 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -21.34 |
| Energy contribution | -21.62 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18637342 94 - 24543557 UUUUUGAUUCCACUGUUGAG-UUUUCCGAAAACACGGCGAACCAACAAAUUACGACCCCAAUUGCGGAAGAGCAGUUAAACGGCAAAAGAGUGGA ........((((((((((.(-(((.(((......))).)))))))).......(.((..((((((......))))))....))).....)))))) ( -25.30, z-score = -2.25, R) >droSim1.chr3L 17947623 94 - 22553184 UUUUUGAUUCCACUGUUGAG-UUUUCCGAAAACACGGCGAACCAGCAAAUUACGACCGCAAUUGCGGAAGAGCAGUUAAACGGCAAAAGAGUGAA ..........((((((((.(-(((.(((......))).)))))))).......(.(((.((((((......))))))...)))).....)))).. ( -24.00, z-score = -1.53, R) >droSec1.super_19 617426 94 - 1257711 UUUUUGAUUCCACUGUUGAG-UUUUCCGAAAACACGGCGAACCAGCAAAUUACGACCGCAAUUGCGGAAGAGCAGUUAAACGGCAAAAGAGUGGA ........((((((((((.(-(((.(((......))).)))))))).......(.(((.((((((......))))))...)))).....)))))) ( -28.00, z-score = -2.55, R) >droYak2.chr3L 8775303 94 + 24197627 -UUUUGAUUCCACUGUUGAGUUUUUCCGAAAACACGGCAAACCAGCAAAUUACGACCGCAAUUGCGGAAGAGCAGUUAAACGGCAAACGAGUGGA -.......((((((((((.((((..(((......))).)))))))).......(.(((.((((((......))))))...)))).....)))))) ( -25.70, z-score = -1.84, R) >droEre2.scaffold_4784 10482611 94 + 25762168 UUUUUGAUUCCACUGUUGAG-UUUUCCGAAAGCAGGGCGAACCAGCAAAUUACGACCGCAAUUGCGGAAGAGCAGUUAAACGGCAAAAGAGUGGA ........((((((((((.(-(((.((........)).)))))))).......(.(((.((((((......))))))...)))).....)))))) ( -25.90, z-score = -1.45, R) >consensus UUUUUGAUUCCACUGUUGAG_UUUUCCGAAAACACGGCGAACCAGCAAAUUACGACCGCAAUUGCGGAAGAGCAGUUAAACGGCAAAAGAGUGGA ........((((((((((.(.(((.(((......))).)))))))).......(.(((.((((((......))))))...)))).....)))))) (-21.34 = -21.62 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:06 2011