| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,623,994 – 18,624,087 |
| Length | 93 |
| Max. P | 0.612611 |
| Location | 18,623,994 – 18,624,087 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 68.96 |
| Shannon entropy | 0.50037 |
| G+C content | 0.46592 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -13.43 |
| Energy contribution | -14.82 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18623994 93 + 24543557 ACAACAUUGGCACACAACUUUUGGUGGCGGAUGGU-----GGGUGUGGGUGUCAACGUUGUUUU------GGUUUUUGUUACUGCGAAAGUCCCACGCCCACAG ....((((.((.(((........))))).))))((-----((((((((((....))........------(..((((((....))))))..))))))))))).. ( -36.20, z-score = -2.29, R) >droSim1.chr3L 17934805 76 + 22553184 ----------------ACUUUUC-UGUUGGAUAGUU----GGAUGUGGGUGUCAAUGUUGUUUU------GGUUUU-GUUAGUGCGAAAGUCCCACGCCCACAG ----------------(((.(((-....))).))).----...((((((((((((.......))------).((((-((....)))))).....))))))))). ( -18.90, z-score = -0.83, R) >droSec1.super_19 604312 76 + 1257711 ----------------ACUUUUC-UGUUGGAUAGUU----GGGUGUGGGUGUCAACGUUGUUUU------GGUUUU-GUUAGUGCGAAAGUCGCACGCCCACAG ----------------((((..(-(((...))))..----))))((((((...((((.......------.....)-))).(((((.....))))))))))).. ( -21.90, z-score = -1.44, R) >droEre2.scaffold_4784 10469331 81 - 25762168 ----------------ACAUUGACACACAACUUUUCUGGUGGGUGUGGGUGUCAGCGUUGUUUU-------GGUUUUGUUAGUGCAAAAUUCGCACGCCCCCAG ----------------...................((((.(((((((.((....))........-------((((((((....))))))))..))))))))))) ( -22.40, z-score = -0.20, R) >droYak2.chr3L 8761740 88 - 24197627 ----------------ACAUUGACACACAACUUUUCUGCUGGGUGUGGGUGUCAACGUUGUUUUGGCUUUGCUAUUUGUUAGUGCGAAAGUCCCACGCCCAUUG ----------------.......................((((((((((.(((((.......)))))...((((.....))))((....))))))))))))... ( -25.60, z-score = -1.12, R) >droAna3.scaffold_13337 4501120 83 - 23293914 -----------ACCAAACAUAGACUAUAAACUUUU-----GGUAGUGGGUGUCAACGUUGUUUU-----UGGGGUUUGUUAGUGCAAAAAUCCCACGCCCACUG -----------((((((...((........)))))-----)))(((((((((((....))....-----.(((((((((....)))..))))))))))))))). ( -23.40, z-score = -1.37, R) >consensus ________________ACAUUGACUGUCAAAUUGU_____GGGUGUGGGUGUCAACGUUGUUUU______GGUUUUUGUUAGUGCGAAAGUCCCACGCCCACAG ........................................((((((((((....))..............(((((((((....))))))))))))))))).... (-13.43 = -14.82 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:06 2011