Locus 7919

Sequence ID dm3.chr3L
Location 18,519,825 – 18,519,939
Length 114
Max. P 0.840537
window10901

overview

Window 1

Location 18,519,825 – 18,519,939
Length 114
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 80.56
Shannon entropy 0.31867
G+C content 0.36798
Mean single sequence MFE -27.90
Consensus MFE -17.75
Energy contribution -20.00
Covariance contribution 2.25
Combinations/Pair 1.17
Mean z-score -2.07
Structure conservation index 0.64
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.87
SVM RNA-class probability 0.840537
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 18519825 114 - 24543557
AGAAUCGCUCUUUAGUGGAAGAGCUAAUAUCGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUAAACGGUGUGAUACACACUGUGAUAAACAGUGGAAUUCCGAGUACC
....(((((((((....)))))))...........((((.((....(((((((((((.(((...))))))))))))))..)).((((((.....))))))...))))))..... ( -31.60, z-score =  -2.89, R)
>droSim1.chr3L 17837551 114 - 22553184
CGAAUCGCUCUUUAGUGGAAGAGCUAAUAUUGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUGAACGGUGUGAUACACACUGUGAUAUACAGUGGAAUUCCGGGUACC
.((((((((((((....)))))))...(((((((((............((((((((.....)))))))).((((((((...))))))))..)))))))))).))))........ ( -31.40, z-score =  -2.34, R)
>droSec1.super_19 512275 114 - 1257711
CGAAUCGCUCUUUAGUGGAAGAGCUAAUAUUGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUGAACGGUGUGAUACACACUGUGAUAUACAGUGGAAUUCCGGGUACC
.((((((((((((....)))))))...(((((((((............((((((((.....)))))))).((((((((...))))))))..)))))))))).))))........ ( -31.40, z-score =  -2.34, R)
>droYak2.chr3L 8667146 95 + 24197627
AGAAUCUUUCAUUAGCGGAAUAGAUAAUAUAACGCGGAGUGUUUAACUUUUUGUUUAAUUGAA---------GUUGGGAUACACACUGUGAUAUUCAGUUUAAU----------
.((((...((((..(((..(((.....)))..)))((.((((((((((((..........)))---------)))))...)))).)))))).))))........---------- ( -17.20, z-score =  -0.70, R)
>consensus
AGAAUCGCUCUUUAGUGGAAGAGCUAAUAUUGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUGAACGGUGUGAUACACACUGUGAUAUACAGUGGAAUUCCGGGUACC
......(((((((....)))))))...........((((.((....(((((((((((..........)))))))))))..)).((((((.....))))))...))))....... (-17.75 = -20.00 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:00 2011