Locus 7916

Sequence ID dm3.chr3L
Location 18,453,583 – 18,453,636
Length 53
Max. P 0.806443
window10897

overview

Window 7

Location 18,453,583 – 18,453,636
Length 53
Sequences 5
Columns 68
Reading direction forward
Mean pairwise identity 54.24
Shannon entropy 0.71790
G+C content 0.41360
Mean single sequence MFE -14.96
Consensus MFE -5.98
Energy contribution -8.02
Covariance contribution 2.04
Combinations/Pair 1.43
Mean z-score -1.16
Structure conservation index 0.40
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.75
SVM RNA-class probability 0.806443
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 18453583 53 + 24543557
UUAAAACUGCUUGUUUCGCAAGCUCGUGAACAACAAGCAGUGCUGA-UAGUGGU--------------
(((..((((((((((((((......))))..))))))))))..)))-.......-------------- ( -17.40, z-score =  -2.30, R)
>droSec1.super_19 448346 53 + 1257711
UUGAAACUGCUUGUUUCGCAAGUUCGUGGACGACAAGCAGUACUCA-CAGUGGU--------------
.(((.((((((((((((((......))))..))))))))))..)))-.......-------------- ( -17.10, z-score =  -1.79, R)
>droSim1.chr3L 17787914 53 + 22553184
UUGAAACUGCUUGUUUCGCAAGUUCGUGGACGACAAGCAGUGCUCA-CAGUGGU--------------
.(((.((((((((((((((......))))..))))))))))..)))-.......-------------- ( -18.70, z-score =  -1.88, R)
>droGri2.scaffold_15110 2624606 68 - 24565398
GCUAUAUUGCACUGCUCGCAAGCAGUGAACAUUUAAAAAGUAGCAAGCAGUUUUGUGUUGGUUGUGGU
((((((...(((((((....)))))))(((((..(((..((.....))..))).)))))...)))))) ( -16.00, z-score =   0.43, R)
>triCas2.ChLG10 2450482 50 - 8806720
UGAAAAUUGUGAGUUUAACAAGUUUUUCGAUUUU--GCAUUUCCCA-AAAUUU---------------
.(((((((((.......))))..)))))((((((--(.......))-))))).--------------- (  -5.60, z-score =  -0.27, R)
>consensus
UUAAAACUGCUUGUUUCGCAAGUUCGUGGACGACAAGCAGUACUCA_CAGUGGU______________
.....((((((((((((((......)))))..)))))))))........................... ( -5.98 =  -8.02 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:56 2011