| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,451,335 – 18,451,436 |
| Length | 101 |
| Max. P | 0.987558 |
| Location | 18,451,335 – 18,451,436 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.58 |
| Shannon entropy | 0.44208 |
| G+C content | 0.48780 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -15.90 |
| Energy contribution | -18.65 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.987558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18451335 101 - 24543557 ------GCAGCUC-CUGCUUUGGCUUGACUUUGAAUUUGAGUGCGAUGUGCACUUGUACUCCACUCGUUCUCAGCUCGGCCAUUAAUUAUUUAAAAUGCUCGGCGCCA ------((((...-))))..((((.......(((...((((((.((.((((....))))))))))))...)))(((.(((..((((....))))...))).))))))) ( -29.90, z-score = -2.09, R) >droEre2.scaffold_4784 10321956 101 + 25762168 ------GCAGCUC-CGGCUUCGGCUUGGCUUUGAGUUUGAGUGCGAUGUGCACUUGUACUCCACUCGUUCUCAACUCGGCCAUUAAUUAUUUAAAAUGCUCGGCGCCA ------...((.(-((((....)).((((((((((..((((((.((.((((....))))))))))))..)))))...)))))..................))).)).. ( -37.50, z-score = -3.70, R) >droYak2.chr3L 8608298 108 + 24197627 GCUGCUUUACUUUGCCGCUUCGGCUUGACUUUGAGUUUGAGUGCGAUGUGCACUUGUACUCCACUCGCUCUCAACUCGGCCAUUAAUUAUUUAAAAUGCUCGGCGCCA ((.((........)).))...(((.(((..(((((..((((((.((.((((....))))))))))))..))))).)))(((....(((......)))....)))))). ( -32.80, z-score = -2.96, R) >droSec1.super_19 446174 101 - 1257711 ------GCAGCCC-CUGCUUCGGCUUGACUUUGAGUUUGAGUGCGAUGUGCACUUGUACUCCACUCGUUCUCAGCUCAGCCAUUAAUUAUUUAAAAUGCUCGGCGCCA ------((((...-))))...(((.......((((..((((((.((.((((....))))))))))))..))))(((.(((..((((....))))...))).)))))). ( -34.90, z-score = -3.56, R) >droSim1.chr3L 17785796 101 - 22553184 ------GCAGCUC-CUGCUUCGGCUUGACUUUGAGUUUGAGUGCGAUGUGCACUUGUACUCCACUCGUUCUCAGCUCGGCCAUUAAUUAUUUAAAAUGCUCGGCGCCA ------((((...-))))...(((.......((((..((((((.((.((((....))))))))))))..))))(((.(((..((((....))))...))).)))))). ( -34.90, z-score = -3.17, R) >droVir3.scaffold_13049 21646824 80 - 25233164 ------------------------GCAGCCACAACUGGAAUUGUG----GCACGGGGGCUGCGACCACUCUAUACUCUAACAUUAAUUAUUUAAACUGCACUGCACCA ------------------------((((((((((......)))))----))..(((((......)).)))..........................)))......... ( -17.20, z-score = -0.79, R) >consensus ______GCAGCUC_CUGCUUCGGCUUGACUUUGAGUUUGAGUGCGAUGUGCACUUGUACUCCACUCGUUCUCAACUCGGCCAUUAAUUAUUUAAAAUGCUCGGCGCCA .....................(((......(((((..((((((.((.((((....))))))))))))..)))))....(((....(((......)))....)))))). (-15.90 = -18.65 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:55 2011