| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,418,119 – 18,418,220 |
| Length | 101 |
| Max. P | 0.979139 |
| Location | 18,418,119 – 18,418,220 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.16 |
| Shannon entropy | 0.59473 |
| G+C content | 0.45471 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.77 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18418119 101 + 24543557 -UUUUGCCUGCAGUUGGCAGCAG-CCGAAUCCUUCCUUACCAA-CUCGGUCC--UUCCACCGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA -.......((((.(((((....)-)))).............((-((((((..--....))))))))(((((((...(((((....).))))..))))))).)))). ( -28.90, z-score = -3.32, R) >droSim1.chr3L 17753019 101 + 22553184 -UUUUGCCUGCAGUUGGCAGCAG-CCGAAUCCUUCCUUACCAA-CUCGGUCC--UUCCAUCGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA -.......((((.(((((....)-)))).............((-((((((..--....))))))))(((((((...(((((....).))))..))))))).)))). ( -26.30, z-score = -2.50, R) >droSec1.super_19 413523 101 + 1257711 -UUUUGCCUGCAGUUGGCAGCAG-UCGAAUCCUUCCUUACCAA-CUCGGUCC--UUCCAUCGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA -...((((.......))))(((.-.................((-((((((..--....))))))))(((((((...(((((....).))))..))))))).))).. ( -25.70, z-score = -2.40, R) >droYak2.chr3L 8574898 101 - 24197627 -UUUUGCCUGCAGUUGGCAGCAG-CCGAAUCCUUCCUUACCAA-CUCUGUCC--UUCCACCGAGCUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA -.......((((.(((((....)-))))...............-(((.((..--....)).))).((((((((...(((((....).))))..)))))))))))). ( -21.30, z-score = -1.10, R) >droEre2.scaffold_4784 10289461 101 - 25762168 -UUUUGCCUGCAGUUGGCAGCAG-CCGAAUCCUUCCUUACCAA-CUCUGUCC--UUCCACCGAGCUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA -.......((((.(((((....)-))))...............-(((.((..--....)).))).((((((((...(((((....).))))..)))))))))))). ( -21.30, z-score = -1.10, R) >droAna3.scaffold_13337 4314695 101 - 23293914 -UUCUGCCUGCAGUUGGCAG-GACUUGAAUCCUUCCUUUCCAAGUUCAAUCC--UUCCAUAGAGUU-ACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA -.......(((...(((.((-((.((((((.............)))))))))--).)))....(((-((((((...(((((....).))))..)))))))))))). ( -25.52, z-score = -2.64, R) >dp4.chrXR_group6 11312314 106 + 13314419 UUUUUUCCUGCAGUUGGCAGUGCCCCCAAUCCAAUCCAAUCCGUCCCCAUCCAACCCCAUGGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA .......((((.....))))(((..........................((((......))))..((((((((...(((((....).))))..)))))))).))). ( -19.90, z-score = -1.45, R) >droPer1.super_20 1212938 106 + 1872136 UUUUUUCCUGCAGUUGGCAGUGCCCCCAAUCCAAUCCAAUCCGUCCCCAUCCAACCCCAUGGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA .......((((.....))))(((..........................((((......))))..((((((((...(((((....).))))..)))))))).))). ( -19.90, z-score = -1.45, R) >droGri2.scaffold_15110 2583248 83 - 24565398 --------------------UGCCUUCUGCAGUUGGCAGACGUU---CGUGUCUAUCCACAGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA --------------------(((.(((((....(((.(((((..---..)))))..)))))))).((((((((...(((((....).))))..)))))))).))). ( -20.70, z-score = -0.69, R) >droMoj3.scaffold_6680 16089235 87 + 24764193 ----------------UCGAUAUCCUCUGCCAUGGACAGACAUC---CGUGUCCAGCUACGGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA ----------------........(((((...((((((......---..))))))....))))).((((((((...(((((....).))))..))))))))..... ( -23.40, z-score = -1.62, R) >droVir3.scaffold_13049 21613279 85 + 25233164 ---------------------GCCUUCUGCAGUUGGCAGUCGUCGUCCGUGUCCAUUCACUGAGCUUACGUGUUGUUGUACAUUUGUUACGCUACACGUAAUGCAA ---------------------(.(..((((.....))))..).).((.(((......))).))((((((((((.((.((((....).))))).)))))))).)).. ( -21.20, z-score = -0.29, R) >consensus _UUUUGCCUGCAGUUGGCAGCAGCCCGAAUCCUUCCUUACCAA_CUCCGUCC__UUCCACCGAGUUUACGUGUUUUUGUACAUUUGUUACGCUACACGUAAUGCAA .......((((.....))))...........................................((((((((((...(((((....).))))..)))))))).)).. (-12.33 = -12.77 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:48 2011