| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,641,072 – 5,641,170 |
| Length | 98 |
| Max. P | 0.894984 |
| Location | 5,641,072 – 5,641,170 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 62.34 |
| Shannon entropy | 0.76980 |
| G+C content | 0.39444 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -8.00 |
| Energy contribution | -6.70 |
| Covariance contribution | -1.30 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5641072 98 + 23011544 CCACAUUCUGAGUAUUCCAGAUUGC-AUAGCUUUGUGCUACUA------UUGCUAUACGGUCUGGGACACUUUUAACAUGGUAUCAAAUCAGAUUCACCUAAUAG-------- (((..((..((((.((((((((((.-(((((..((......))------..))))).)))))))))).))))..))..)))........................-------- ( -25.50, z-score = -2.76, R) >droPer1.super_10 1231306 104 - 3432795 CUAUAUUCUGAGUAUUGCCUCCUGUUGUAGUUGUGGAAUAUUGAAAUAUCAACUAUACGGUUCGGAAUCCUCUAAAUAUGGCAGCCACUAAAGACAACCAGAGG--------- (((((((..(((.(((.((..((((.(((((((................)))))))))))...))))).)))..))))))).......................--------- ( -19.59, z-score = 0.30, R) >dp4.chr4_group4 3404404 104 - 6586962 CUAUAUUCUGAGUAUUGCCUCCUGUUGUAGUUGUGGAAUAUUGAAAUAUCAACUAUACGGUUCGGAAUCCUCUAAAUAUGGCAGCCACUAAAGACAACCAGAGG--------- (((((((..(((.(((.((..((((.(((((((................)))))))))))...))))).)))..))))))).......................--------- ( -19.59, z-score = 0.30, R) >droAna3.scaffold_12916 11084872 101 + 16180835 CCAGAUUCUGAGUAUUCCUGAUUGC-AUAGCUCUGUGUUGUGA------CUGCUAUACGGUCUGGGACACUUCUAACAUGGCAUCAAAUCUGUGUCAACGGCAGCAGG----- (((..((..((((.((((.(((((.-(((((...((......)------).))))).))))).)))).))))..))..)))........((((((.....))).))).----- ( -26.20, z-score = 0.17, R) >droEre2.scaffold_4929 5729546 97 + 26641161 CCAGAUUCAGAGUAUUCCAGAUUGC-AUAGCUUUGGGCUUUGA------UUGCUAUACGGUCUGGGACACUUUAAACGUGGCAUCAAUCCU-AUUCAACUGAUGG-------- (((..((.(((((.((((((((((.-(((((............------..))))).)))))))))).))))).))..)))(((((.....-.......))))).-------- ( -28.64, z-score = -2.39, R) >droYak2.chr2L 8772218 99 - 22324452 CCAGAUUCUGAGUAUUCCUGAUUGC-AUAGCUUUGGCCUUUGA------UUGCUAUACGGUCUGGGACACUUUUAACGUGGUAUCAAAUCUGAUUCAACCGAAGGA------- .((((((.(((...((((.(((((.-(((((............------..))))).))))).))))(((.......)))...)))))))))..............------- ( -22.84, z-score = -0.33, R) >droSec1.super_5 3718813 98 + 5866729 CCACAUUCUGAGUAUUCCAGAUUGC-AUAGCUUUGUGCUACUA------UUGCUGUACGAUCUGGGAGACUUUUAACAUGGUAUCAAAUCUGAUUCCCCCAAAGG-------- ((.......((((.((((((((((.-(((((..((......))------..))))).)))))))))).)))).......((.((((....)))).))......))-------- ( -26.90, z-score = -2.46, R) >droSim1.chr2L 5434158 98 + 22036055 CCACAUUCAGAGUAUUCCAGGUUGC-AUAGCUUUGUGCUACUA------UUGCUGUACGAUCUGGGACACUUUUAACAUGGUAUCAAAUCUGAUUCCCCCAAACG-------- ........(((((.((((((((((.-(((((..((......))------..))))).)))))))))).)))))......((.((((....)))).))........-------- ( -26.40, z-score = -2.65, R) >droWil1.scaffold_180708 3937397 106 - 12563649 CUAAAUUCUGAGUAUUCCUGAUUGC-AUAGUGUGUAUUUGAUA------CUACUAUACGGUCGGGGAAACUUUUAACAUGGCCCAAAUGAUAAAUGACAGUGACAAUGAAAAA .......((((((.((((((((((.-(((((((((.....)))------).))))).)))))))))).)))((((.(((.......))).))))...)))............. ( -24.30, z-score = -1.94, R) >droMoj3.scaffold_6500 14018214 85 + 32352404 -----CUUUGAGUAUUCCUUAUUGC-AUAGUUUACA--UAUAA------UUACUAUACAGUCUGGAGCACUUAAAGUUGGGCAUAGACAACCGAACAAC-------------- -----((((((((.((((..((((.-(((((.....--.....------..))))).))))..)))).))))))))((((..........)))).....-------------- ( -21.00, z-score = -3.00, R) >droGri2.scaffold_15252 3147017 96 + 17193109 CUAAAUUCCAAGUAUUCCUUAUUGC-AUAGUUUAUAAUUG--A------AUACUAUACAAUCUGGCGUUCUUAGAAUUUGUCAUAAGACUUCACAUAACAAAAUG-------- ..((((((.(((.((.((..((((.-(((((.........--.------..))))).))))..)).)).))).))))))(((....)))................-------- ( -15.60, z-score = -1.95, R) >consensus CCACAUUCUGAGUAUUCCUGAUUGC_AUAGCUUUGGGCUAUUA______UUGCUAUACGGUCUGGGACACUUUUAACAUGGCAUCAAAUCUGAUUCACCAGAAGG________ (((..((..(((..((((..((((...((((....................))))..))))..))))..)))..))..)))................................ ( -8.00 = -6.70 + -1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:34 2011