| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,413,165 – 18,413,271 |
| Length | 106 |
| Max. P | 0.528652 |
| Location | 18,413,165 – 18,413,271 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.13 |
| Shannon entropy | 0.54027 |
| G+C content | 0.43947 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -13.72 |
| Energy contribution | -14.33 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18413165 106 + 24543557 UGCACAGUCGAACACAGUCGAUGUUUUGCUCGGGGGG----------UCCUGAUUUCUGGAGGGGUUAACCCUUUCGAAUACGUUUCAAGUGUGUUUUUGAAACCUAUUUUGAUAU .(((..(((((......)))))....)))(((((...----------.))))).....(((((((....)))))))(((((.((((((((......)))))))).)))))...... ( -31.10, z-score = -1.44, R) >droSim1.chr3L 17748112 96 + 22553184 ----------ACCACAGUCGAAGGUUUGCUGGGGGUG----------UCCUGAUUUCUGGAGGGGUUAACCCUUUCGAAUACGUUUCAAGUGUGUUUUUGAAACCUAUUUUGAUAU ----------.((.(((((....)...)))).))(((----------((.........(((((((....)))))))(((((.((((((((......)))))))).))))).))))) ( -27.70, z-score = -1.21, R) >droSec1.super_19 408754 96 + 1257711 ----------ACCACAGUCGAAGAUUUCCUGGGGGUG----------UCCUGAUUUCUGGAGGGGUUAACCCUUUUGAAUACGUUUCAAGUGUGUUUUUGAAACCUAUUUUGAUAU ----------......(((((((..(((..((((((.----------...((((..(....)..))))))))))..)))...((((((((......))))))))...))))))).. ( -23.80, z-score = -0.17, R) >droYak2.chr3L 8569270 103 - 24197627 ----------ACCUCAGUCGAUGGUUUGCCUAGGGUGGCAAGAGGUCUUCUGAUUUCUGGAGGGGUUAACCCUUUGGAAUACGUUUUAAGUGUGUUUUUGAAACCUUGUUCGA--- ----------...((((..(((..((((((......))))))..)))..)))).(((..(((((.....)))))..)))...((((((((......)))))))).........--- ( -34.70, z-score = -2.36, R) >droEre2.scaffold_4784 10284539 106 - 25762168 ----------ACCACAGUCGCUGGUUUUCCCAUGGUGGCAAGAGGUUUUCUGAUUUCUGGAGGGGUUAACCCUUCGGAACACGUUUUAAGUGUUCUCUUGAAGCCCUAUUUGAUAC ----------......(((..(((.....))).(((..(((((((..........(((((((((.....)))))))))((((.......)))))))))))..)))......))).. ( -33.50, z-score = -1.70, R) >droAna3.scaffold_13337 4310595 89 - 23293914 ----------ACCACAGUAGGUGGUUAGCUAAGGGUGG---------CAGUGGUUU---AAGGGGUUUGGGACUAGCUAUGAGGAACAUG---GAUUUUGAACCCUUCCUAUAU-- ----------(((((.....)))))..((((....)))---------).((((...---.(((((((..(((....(((((.....))))---).)))..))))))).))))..-- ( -25.30, z-score = -0.50, R) >consensus __________ACCACAGUCGAUGGUUUGCUCAGGGUG__________UCCUGAUUUCUGGAGGGGUUAACCCUUUGGAAUACGUUUCAAGUGUGUUUUUGAAACCUAUUUUGAUAU ................(((((.................................(((..(((((.....)))))..)))...((((((((......)))))))).....))))).. (-13.72 = -14.33 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:47 2011