| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,381,152 – 18,381,243 |
| Length | 91 |
| Max. P | 0.788764 |
| Location | 18,381,152 – 18,381,243 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.35 |
| Shannon entropy | 0.53373 |
| G+C content | 0.46851 |
| Mean single sequence MFE | -20.91 |
| Consensus MFE | -12.43 |
| Energy contribution | -12.27 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788764 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 18381152 91 - 24543557 ------CCAGGGAAGCAAACUUUUCCACGGA----------CGGGGGGAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------((..(((((......)))))..)).----------...(.(((((((((........((.(....).))........(....).......))))))))).) ( -21.60, z-score = -0.96, R) >droPer1.super_20 1174762 101 - 1872136 ------UUGGCAGCAAAGUUUUCCCCAUAGGGUGACGGCAGGGGAAAGAAAAAUCAUUAACACGCCCGCAAGCCCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------(((((.......((((((((....(....)....))))))))...............(..(....)..)..))))).(....).....((((....)))). ( -25.00, z-score = -0.73, R) >dp4.chrXR_group6 11274150 101 - 13314419 ------UUGGCAGCAAAGUUUUCCCCAUAGGGUGACGGCAGGGGAAAGAAAAAUCAUUAACACGCCCGCAAGCCCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------(((((.......((((((((....(....)....))))))))...............(..(....)..)..))))).(....).....((((....)))). ( -25.00, z-score = -0.73, R) >droAna3.scaffold_13337 4279281 96 + 23293914 ------UUGAGGAAGGAAACUUCUCCUGGAGACGAC-----GGAGAGAAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------(((.((.((....))(((((((....))..-----)))))...................)).)))((....))....(....).....((((....)))). ( -22.30, z-score = -1.44, R) >droEre2.scaffold_4784 10251140 90 + 25762168 ------CCAGGGAAGCAAACUUUUCCACGG-----------ACGGGGGAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------((..(((((......)))))..))-----------...(.(((((((((........((.(....).))........(....).......))))))))).) ( -21.60, z-score = -1.27, R) >droYak2.chr3L 8536003 91 + 24197627 -----CCAAAGGAAGCAAACUUCUCCACGG-----------AGGGGGGAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC -----.........((...((((((....)-----------)))))(((((((((........((.(....).))........(....).......))))))))))) ( -23.80, z-score = -1.91, R) >droSec1.super_19 376756 90 - 1257711 ------CCCGGGAAGCAAACUUUUCCACGG-----------ACGGGGGAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------.((((((((......))))).)))-----------...(.(((((((((........((.(....).))........(....).......))))))))).) ( -24.40, z-score = -1.68, R) >droSim1.chr3L 17716260 90 - 22553184 ------CCAGGAAAGCAAACUUUUCCACGG-----------ACGGGGGAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ------((.((((((.....)))))).(((-----------.((((.(..............).)))))..((....))....))...))....((((....)))). ( -20.74, z-score = -1.26, R) >droMoj3.scaffold_6680 16040807 71 - 24764193 ----------------------------------GCACGAGGGUAGAGAAAAAUCAUUAACACG-CCGCAAGC-CAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ----------------------------------............(((((((((........(-.(....).-)........(....).......))))))))).. ( -12.10, z-score = -0.75, R) >droGri2.scaffold_15110 2537836 85 + 24565398 -----GCUCGCUGGCAAAACUUUCCA---------------AAGACAGAAAAAUCAUUAACACG-CCGCAAGC-CAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC -----(((....)))...........---------------....((((((((((........(-.(....).-)........(....).......)))))))))). ( -16.10, z-score = -1.10, R) >droWil1.scaffold_180949 5872401 99 + 6375548 CGAAGGAUGUUGCAAAAAGUUUUCUGUUCGUACG-------AAGAGAGAAAAAUCAUUAACACGCCCGCAAGC-CAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ....((.(((((.......((((((.(((....)-------)).)))))).......)))))....(....))-)........(....).....((((....)))). ( -17.34, z-score = 0.10, R) >consensus ______CUAGGGAAGCAAACUUUUCCACGG___________AGGGGGGAAAAAUCAUUAACACGCCCGCAAGCGCAAGCCAAACGAAAGGAUAACAGAUUUUUCUGC ..............................................(((((((((................((....))....(....).......))))))))).. (-12.43 = -12.27 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:42 2011