| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,336,507 – 18,336,599 |
| Length | 92 |
| Max. P | 0.994012 |
| Location | 18,336,507 – 18,336,599 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.36101 |
| G+C content | 0.33632 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -16.23 |
| Energy contribution | -15.96 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.994012 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 18336507 92 + 24543557 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUU-UUGGCAAA-CGCAACAUACAUAUCUCU------------ ((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))((.-...((...-.)).....))........------------ ( -21.30, z-score = -2.62, R) >droSim1.chr3L 17670398 92 + 22553184 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUAUGUGGUUUCAGCUUUGGUU-UUGGCAAA-CGCAACACACAUAUCUCU------------ ((((((((((((((.(.((((((...((....))....)))))).).))))))))..))))))(((-.((.....-)).)))............------------ ( -17.70, z-score = -1.25, R) >droSec1.super_19 331793 92 + 1257711 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUU-UUGGCAAA-CGCAACACACAUAUCUCU------------ ((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))(((-.((.....-)).)))............------------ ( -21.20, z-score = -2.53, R) >droYak2.chr3L 8491431 92 - 24197627 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUU-UUGGCAAG-CCCAGCAUACAUGUCUCU------------ ((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))(((-..((....-)).)))............------------ ( -21.80, z-score = -1.70, R) >droEre2.scaffold_4784 10207449 91 - 25762168 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUU-U-GGCAAG-CCCAACAUACAUGUCUCC------------ ((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))(((-.-((....-)).)))............------------ ( -23.70, z-score = -2.81, R) >droAna3.scaffold_13337 4236165 88 - 23293914 CGAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUUAGCUUUGGUU-UUGGCAAA-CGC----CACAUAUCCCC------------ ((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))...-.((((...-.))----)).........------------ ( -24.50, z-score = -3.44, R) >dp4.chrXR_group6 11224283 105 + 13314419 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUUAGCUUUGGUU-UUGGCACAGCUAUACGUUUCUAUGUAUCUGUGUAUCUAU ((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))...-...((((((..((((((....))))))))))))...... ( -30.80, z-score = -4.42, R) >droWil1.scaffold_180949 5802467 88 - 6375548 CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGCGGUUUUAGCUUUGGUU-UUAGC-CAAAGGUUCGUCUUUAU---------------- .((((.((((..((((.((((((...((....))....)))))).))))..))))...(((((((.-...))-)))))......))))..---------------- ( -18.90, z-score = -1.59, R) >droVir3.scaffold_13049 21528214 81 + 25233164 CAAGGCAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGCGGUUUUAGCUUUGGUUGCUGGCAUA-AGCGAC------------------------ ((((((((((..((((.((((((...((....))....)))))).))))..))))..))))))((((((......-))))))------------------------ ( -23.80, z-score = -3.02, R) >droMoj3.scaffold_6680 15974454 94 + 24764193 CAAAGCAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGCGGUUUUAGCUUUGGUUGCUGGCAAACAGCAACAGAGAUAUGUUU------------ ((((((((((..((((.((((((...((....))....)))))).))))..))))..))))))(((((((.....)))))))............------------ ( -29.00, z-score = -3.77, R) >droGri2.scaffold_15110 2487665 81 - 24565398 CAAAGCAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGCGGUUUUAGCUUUGGUUGCUGGCAUA-AGCGAC------------------------ ((((((((((..((((.((((((...((....))....)))))).))))..))))..))))))((((((......-))))))------------------------ ( -24.10, z-score = -3.08, R) >consensus CAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUUAGCUUUGGUU_UUGGCAAA_CGCAACAUACAUAUCUCU____________ (((((((((((.((((.((((((...((....))....)))))).)))).)))))..))))))........................................... (-16.23 = -15.96 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:38 2011