| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,331,548 – 18,331,645 |
| Length | 97 |
| Max. P | 0.809640 |
| Location | 18,331,548 – 18,331,639 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 97.58 |
| Shannon entropy | 0.04240 |
| G+C content | 0.38242 |
| Mean single sequence MFE | -6.86 |
| Consensus MFE | -7.04 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.68 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18331548 91 + 24543557 CUCAAAACGAGUGAACUUCCUAACCGAAAGUCCAAAACCGAAGCCGAAAACAAUAAAAGUUACAUUUAGCCCCGAGCAAAUAAAAUUAAAC ........((((((((((......(....)........((....))..........))))).))))).((.....)).............. ( -6.80, z-score = -0.44, R) >droSim1.chr3L 17665521 91 + 22553184 CCCAAAACGAGUGAACUUCCUAACCGAAAGUCCAAAACCGAAGCCGAAAACAAUAAAAGUUACAUUUAGCCCCGAGCAAAUAAAAUUAAAC ........((((((((((......(....)........((....))..........))))).))))).((.....)).............. ( -6.80, z-score = -0.93, R) >droSec1.super_19 326908 91 + 1257711 CCCAAAACGAGUGAACUUCCUAACCGAAAGUCCAAAACCGAAGCCGAAAACAAUAAAAGUUACAUUUAGCCCCGAGCAAAUAAAAUUAAAC ........((((((((((......(....)........((....))..........))))).))))).((.....)).............. ( -6.80, z-score = -0.93, R) >droYak2.chr3L 8486292 91 - 24197627 CCCAAAACGAAUGAACUUCCUAGCCGAAAGUCCAAAACCGAAGCCGAAAACAAUAAAAGUUACAUUUAGCCCGGAGCAAAUAAAAUUAAAC .((.....((((((((((......(....)........((....))..........))))).))))).....))................. ( -7.10, z-score = -0.09, R) >droEre2.scaffold_4784 10202580 91 - 25762168 CCCAAAACGAAUGAACUUCCUAACCGAAAGUCCAAAACCGAAGCCGAAAACAAUAAAAGUUACAUUUAGCCCCGAGCAAAUAAAAUUAAGC ........((((((((((......(....)........((....))..........))))).))))).((.....)).............. ( -6.80, z-score = -0.99, R) >consensus CCCAAAACGAGUGAACUUCCUAACCGAAAGUCCAAAACCGAAGCCGAAAACAAUAAAAGUUACAUUUAGCCCCGAGCAAAUAAAAUUAAAC ........((((((((((......(....)........((....))..........))))).))))).((.....)).............. ( -7.04 = -6.80 + -0.24)
| Location | 18,331,548 – 18,331,639 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 97.58 |
| Shannon entropy | 0.04240 |
| G+C content | 0.38242 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -17.96 |
| Energy contribution | -18.16 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18331548 91 - 24543557 GUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGUUUUGAG ..............((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))(((.....))) ( -19.40, z-score = -1.70, R) >droSim1.chr3L 17665521 91 - 22553184 GUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGUUUUGGG ..............((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))........... ( -18.90, z-score = -1.65, R) >droSec1.super_19 326908 91 - 1257711 GUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGUUUUGGG ..............((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))........... ( -18.90, z-score = -1.65, R) >droYak2.chr3L 8486292 91 + 24197627 GUUUAAUUUUAUUUGCUCCGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGCUAGGAAGUUCAUUCGUUUUGGG .................((((((..((..(((......)))..))..)).))))...(((((((((.....)))))))))........... ( -16.90, z-score = -0.51, R) >droEre2.scaffold_4784 10202580 91 + 25762168 GCUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCAUUCGUUUUGGG .(((((........((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))......))))) ( -19.40, z-score = -1.79, R) >consensus GUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGUUUUGGG ..............((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))........... (-17.96 = -18.16 + 0.20)
| Location | 18,331,554 – 18,331,645 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 98.02 |
| Shannon entropy | 0.03447 |
| G+C content | 0.36264 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -17.96 |
| Energy contribution | -18.16 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18331554 91 - 24543557 GAUUUUGUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGU ....................((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))..... ( -18.90, z-score = -1.66, R) >droSim1.chr3L 17665527 91 - 22553184 GAUUUUGUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGU ....................((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))..... ( -18.90, z-score = -1.66, R) >droSec1.super_19 326914 91 - 1257711 GAUUUUGUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGU ....................((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))..... ( -18.90, z-score = -1.66, R) >droYak2.chr3L 8486298 91 + 24197627 GAUUUUGUUUAAUUUUAUUUGCUCCGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGCUAGGAAGUUCAUUCGU .......................((((((..((..(((......)))..))..)).))))...(((((((((.....)))))))))..... ( -16.90, z-score = -0.60, R) >droEre2.scaffold_4784 10202586 91 + 25762168 GAUUUUGCUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCAUUCGU ....................((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))..... ( -19.00, z-score = -1.62, R) >consensus GAUUUUGUUUAAUUUUAUUUGCUCGGGGCUAAAUGUAACUUUUAUUGUUUUCGGCUUCGGUUUUGGACUUUCGGUUAGGAAGUUCACUCGU ....................((.((((((..((..(((......)))..))..))))))))..(((((((((.....)))))))))..... (-17.96 = -18.16 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:37 2011