| Sequence ID | dm3.chr2L |
|---|---|
| Location | 605,470 – 605,559 |
| Length | 89 |
| Max. P | 0.804105 |
| Location | 605,470 – 605,559 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 76.40 |
| Shannon entropy | 0.44841 |
| G+C content | 0.56658 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -11.24 |
| Energy contribution | -11.47 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 605470 89 - 23011544 CCCGCAUUUAACCCCCUGUUGCCUCUCUCUUAACCCCUUCUAACUGCCCAAAUGCAGCGCACUUGUUUGCG--UCCAAGAGCCUGGCAGCU .................((((((...(((((............((((......))))((((......))))--...)))))...)))))). ( -22.60, z-score = -3.10, R) >droSim1.chr2L 611831 89 - 22036055 CCCGCAUUUAACCCCCUGUUGCCUCUCUCUUAACCCCUCCUAACUGCCCAAUUGCAGCGCACUUGUUUGCG--UCCAAGAGCCUGGCAGCU .................((((((...(((((............((((......))))((((......))))--...)))))...)))))). ( -22.60, z-score = -3.15, R) >droSec1.super_14 588186 89 - 2068291 CCCGCAUUUAACCCCCUGUUGCCUCUCUCUUAACCCCUCCUAACUGCCCAAUUGCAGCGCACUUGUUUUCG--UCCAAGAGCCUGGCAGCU .................((((((....................((((......)))).((.((((......--..)))).))..)))))). ( -18.20, z-score = -2.13, R) >droYak2.chr2L 594331 87 - 22324452 CCCGCAUUUAACCCCCUGUUGCC--CCCCGUAGCCCCUCCUAACUGCCCAAUUGCAGCGCACUUGUUUGUG--UCCAAGAGCCUGGCAGCU .................((((((--..................((((......)))).((.((((......--..)))).))..)))))). ( -17.80, z-score = -0.70, R) >droEre2.scaffold_4929 661429 87 - 26641161 CCCGCGUUUAACCCCCUGUUGCC--CCCCGUAACCCCUCCUAACUGCCCAAUUGCAGCGCACUUGUUUGUG--UCCAAGAGCCUGGCAGCU .................((((((--..................((((......)))).((.((((......--..)))).))..)))))). ( -17.80, z-score = -0.98, R) >anoGam1.chr3L 224952 85 + 41284009 GCUGCGUUUGAUUGCUGGUU-CCGGUACC---GCCACUGACAGUGAUGAGAUUGGCAUGGUUGAGGAUACGGUUUUGAGAGCCUUGCGC-- ((.((.(((.(..((((..(-((...(((---((((....((....))....))))..)))...)))..))))..).)))))...))..-- ( -23.90, z-score = -0.02, R) >consensus CCCGCAUUUAACCCCCUGUUGCCUCUCCCUUAACCCCUCCUAACUGCCCAAUUGCAGCGCACUUGUUUGCG__UCCAAGAGCCUGGCAGCU .................((((((....................((((......)))).((.((((..........)))).))..)))))). (-11.24 = -11.47 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:17 2011