| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,293,676 – 18,293,758 |
| Length | 82 |
| Max. P | 0.722587 |
| Location | 18,293,676 – 18,293,758 |
|---|---|
| Length | 82 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 55.01 |
| Shannon entropy | 0.79879 |
| G+C content | 0.41255 |
| Mean single sequence MFE | -17.55 |
| Consensus MFE | -7.36 |
| Energy contribution | -9.01 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18293676 82 + 24543557 GGGUUAAAGGAUUGCCAGCUACAAGAAGGUUGACAUACUGGAUCUACAAUAGCAGGA----AAUAAAAAGAUCAAUAAAUUUCCAA--------------------- (((((...((..((.(((((.......))))).))..)).))))).........(((----(((..............))))))..--------------------- ( -12.44, z-score = -0.25, R) >dp4.chrXR_group6 11171429 70 + 13314419 -------GUGCACACGAGCUGUU------UCUGCAGAUGGGAUCUAGUUUGGAGGGAAUACGAUGCGGUUAGGGGCUGUCUUU------------------------ -------..((.(...(((((((------(((.(((((........))))).))))........))))))...))).......------------------------ ( -12.70, z-score = 1.84, R) >droAna3.scaffold_13337 4197384 79 - 23293914 GAAACAGCUGCUUGCCAGCUGCAGGAAGGCUGACAAGCUGGACCUGAGGGGAAAAAG----GAUAUCAAUAAUAACAAUUUAC------------------------ ((..((((((.....))))))((((..((((....))))...))))...........----....))................------------------------ ( -18.20, z-score = -0.97, R) >droEre2.scaffold_4784 10165556 106 - 25762168 GGGUCAGAGGAUUGCCAGCUACAGGAGGGGUGGCACACUGGAUCUAUAGUAUAAAUAUCA-AAUCGAAAGAUCAGUAAAAUGAAUACCGAAGAAAUAGAAUUUUCCC ......(((((((((((.((.......)).))))...(((..(((...((((........-..((....))(((......)))))))...)))..)))))))))).. ( -20.80, z-score = -0.19, R) >droYak2.chr3L 8447706 82 - 24197627 GGGUCAGAGGAUUGCCAGCUACUGGAUGGUUGGCACACUGGAUCUAUAAUAGUGGCAGUU-AGUAUUUAAAC---UGAAUUUCCCA--------------------- (((((((.....(((((((((.....))))))))).(((((..((((....))))...))-))).......)---)))....))).--------------------- ( -23.40, z-score = -1.01, R) >droSec1.super_19 289372 82 + 1257711 GGGUCAAAGGAUUGCCAGCUACAUGAAGGUUGGCAUACUGGAUCUAUAAUAGCAAAA----AAUAAAAAGAUCAAUAAACUUCCAA--------------------- ........(((.((((((((.......)))))))).....(((((............----.......)))))........)))..--------------------- ( -17.31, z-score = -1.88, R) >droSim1.chr3L 17624563 82 + 22553184 GGGUCAAAGGAUUGCCAGCUACACGAAGGUUGGCAUACUGGAUCUAUAUUAGCAAAA----AAUAAAAAGAUCAAUAAACUUCCAA--------------------- ........(((.((((((((.......)))))))).....(((((...(((......----..)))..)))))........)))..--------------------- ( -18.00, z-score = -2.30, R) >consensus GGGUCAAAGGAUUGCCAGCUACAGGAAGGUUGGCAUACUGGAUCUAUAAUAGAAAAA____AAUAAAAAGAUCAAUAAACUUCCAA_____________________ (((((...((..((((((((.......))))))))..)).))))).............................................................. ( -7.36 = -9.01 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:32 2011