| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,272,685 – 18,272,753 |
| Length | 68 |
| Max. P | 0.529037 |
| Location | 18,272,685 – 18,272,753 |
|---|---|
| Length | 68 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 84.81 |
| Shannon entropy | 0.27461 |
| G+C content | 0.48354 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -14.74 |
| Energy contribution | -15.13 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529037 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 18272685 68 + 24543557 UGGCCAAGUAGUUUGGCAGGUUGCAGAGGUUGCUUGAGCCACUUGGUUGGAUUACGUUUUUUUGUUUU .((((((((.(((((((((.((....)).)))).))))).)))))))).................... ( -17.50, z-score = -0.68, R) >droSim1.chr3L 17602055 61 + 22553184 UGGCCAAGUAGUUUGGCAGGUUGCAGAGGUUGGUUGAGCCACUUGGUUGGAUUACGUUUUU------- .((((((((.(((..((.....((....))..))..))).)))))))).............------- ( -17.10, z-score = -1.37, R) >droSec1.super_19 266905 60 + 1257711 UGGCCAAGUAGUUUGGCAGGUUGCAGUGGUUGGUUGAGCCACUUGGUUGGAUUACGUUUU-------- .......((((((..((.......(((((((.....)))))))..))..)))))).....-------- ( -17.50, z-score = -1.37, R) >droYak2.chr3L 8427082 63 - 24197627 UGGCCAAGUAGUUUGGCAGGUUGCAGAGGUUGCUUGAGCCACUUGGUUGGAUUACUUUUUGCU----- .(((.((((((((..((((((.((.(((....)))..)).)))).))..))))))))...)))----- ( -19.90, z-score = -0.92, R) >droEre2.scaffold_4784 10145957 62 - 25762168 UGGCCAAGUAGUUUGGCAGGUUGGAGAGAUGGCUUGAGCCUCUUGGUUGGAUUACUUUUUGU------ .....((((((((..(((((((.(((......))).)))))....))..)))))))).....------ ( -19.20, z-score = -1.60, R) >droAna3.scaffold_13337 4178434 61 - 23293914 UGGCCAAGUGGUUUGGCAGGUUGCAGAGGUUGCCUGACCCACUUGGUCGGAAUAAGAGGCU------- .((((((((((((.(((((.((....)).))))).)).)))))))))).............------- ( -25.80, z-score = -2.52, R) >consensus UGGCCAAGUAGUUUGGCAGGUUGCAGAGGUUGCUUGAGCCACUUGGUUGGAUUACGUUUUU_______ .((((((((.(((..((((.((....)).))).)..))).)))))))).................... (-14.74 = -15.13 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:30 2011