| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,260,968 – 18,261,059 |
| Length | 91 |
| Max. P | 0.671436 |
| Location | 18,260,968 – 18,261,059 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.52 |
| Shannon entropy | 0.18366 |
| G+C content | 0.29844 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -14.15 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18260968 91 + 24543557 AAGUUUAAAAAUAGGUUA---UAGCUUUA-AAAAUGUGGAUUUACCAUUUUUAGGAAAGAGUUAGUUGUCCGCAUAGCUAACAAAUUUGGUAGAA ...((((.((((..((..---(((((...-...((((((((.....((((((....)))))).....)))))))))))))))..))))..)))). ( -16.30, z-score = -0.94, R) >droSim1.chr3L 17590233 92 + 22553184 AAGUUUAAAGGUAAGUUA---UAGCUUUACAAACUUUGAAGUUACCAUUUUCUGGAAAGAGUUAGUUGUCCAUACAGCUAACAAAUUAGGUAGAA ...(((((((..((((..---..))))......))))))).(((((....(((....)))(((((((((....)))))))))......))))).. ( -22.60, z-score = -2.60, R) >droSec1.super_19 255053 95 + 1257711 AAGUUUAAAGGUAAGUAAAGGUAGCUUUACAAACUUUGAAGUUACCAUUUUCUGGAAAGAGUUAGUUGUCCAUACAGCUAACAAAUUAGAUAGAA ..((((((...........((((((((((.......))))))))))....(((....)))(((((((((....)))))))))...)))))).... ( -25.50, z-score = -3.56, R) >consensus AAGUUUAAAGGUAAGUUA___UAGCUUUACAAACUUUGAAGUUACCAUUUUCUGGAAAGAGUUAGUUGUCCAUACAGCUAACAAAUUAGGUAGAA ...(((((((..(((((.....)))))......))))))).(((((....(((....)))(((((((((....)))))))))......))))).. (-14.15 = -15.93 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:25 2011