| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,258,074 – 18,258,133 |
| Length | 59 |
| Max. P | 0.732619 |
| Location | 18,258,074 – 18,258,133 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 97.74 |
| Shannon entropy | 0.04407 |
| G+C content | 0.40678 |
| Mean single sequence MFE | -13.72 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18258074 59 + 24543557 ACAAAAGGGUCCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU .............((((((((.(.....)..(((((((....))))))).)))))))). ( -13.60, z-score = -1.00, R) >droAna3.scaffold_13337 4164469 59 - 23293914 ACAAAAAGGCUCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU .((((..(((((....)))))....))))..(((((((....))))))).......... ( -14.10, z-score = -1.81, R) >droEre2.scaffold_4784 10130895 59 - 25762168 ACAAAGGGGUCCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU ....(((...)))((((((((.(.....)..(((((((....))))))).)))))))). ( -13.80, z-score = -0.92, R) >droYak2.chr3L 8411799 59 - 24197627 ACAAAAGGGUCCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU .............((((((((.(.....)..(((((((....))))))).)))))))). ( -13.60, z-score = -1.00, R) >droSec1.super_19 252044 59 + 1257711 ACAAAAGGGUCCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU .............((((((((.(.....)..(((((((....))))))).)))))))). ( -13.60, z-score = -1.00, R) >droSim1.chr3L 17587640 59 + 22553184 ACAAAAGGGUCCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU .............((((((((.(.....)..(((((((....))))))).)))))))). ( -13.60, z-score = -1.00, R) >consensus ACAAAAGGGUCCUGAUGAGUUACAGUUUGGGGCAAUUCAAUGGGAUUGCAAACUCAUUU .............((((((((.(.....)..(((((((....))))))).)))))))). (-13.60 = -13.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:24 2011