| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,256,852 – 18,256,903 |
| Length | 51 |
| Max. P | 0.708314 |
| Location | 18,256,852 – 18,256,903 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 72.94 |
| Shannon entropy | 0.53146 |
| G+C content | 0.50327 |
| Mean single sequence MFE | -13.80 |
| Consensus MFE | -9.23 |
| Energy contribution | -10.07 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18256852 51 - 24543557 AUCAUGUUUGAAAGUGGGGGAGAUUUUGAAACAGAGUCUCCUGCCUCCAAG .(((....))).((.(.(((((((((((...))))))))))).)))..... ( -15.70, z-score = -1.59, R) >droSim1.chr3L 17586416 51 - 22553184 AUCAUGUUUGAAAGUGGGGGAGAUUUUGAAACAGAGUCUCCUGCCUCCAAG .(((....))).((.(.(((((((((((...))))))))))).)))..... ( -15.70, z-score = -1.59, R) >droSec1.super_19 250849 51 - 1257711 AUCAUGGUUGAAAGUGGGGGAGAUUCUGAAACAGAGUCUCCUGCCUCCAAG ....(((.....((.(.(((((((((((...))))))))))).)))))).. ( -19.30, z-score = -2.37, R) >droYak2.chr3L 8410558 51 + 24197627 CUCAUGUUUGAAAGUGGGGGAGAUUUUGGAGCAGAGUCUCCUGCCUCCAAG .......(((..((.(.(((((((((((...))))))))))).))).))). ( -15.60, z-score = -0.70, R) >droEre2.scaffold_4784 10129689 51 + 25762168 AUCAGGUUUGAAUGUGGGAUGGAUUUUGGAACGGAGUCUCCUGCCUCCGAG .......(((...(..(((..(((((((...))))))))))..)...))). ( -9.90, z-score = 1.25, R) >droGri2.scaffold_15110 2406976 51 + 24565398 AUCAUGUCCUGUAGUGCCCCCAAUCCCGCUGUUCCAGGCCGAGCAUCCUGC ....((.(((((((((..........)))))...)))).)).......... ( -6.60, z-score = 0.72, R) >consensus AUCAUGUUUGAAAGUGGGGGAGAUUUUGAAACAGAGUCUCCUGCCUCCAAG ...............(.(((((((((((...))))))))))).)....... ( -9.23 = -10.07 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:24 2011