| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,246,173 – 18,246,264 |
| Length | 91 |
| Max. P | 0.620907 |
| Location | 18,246,173 – 18,246,264 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 83.24 |
| Shannon entropy | 0.28682 |
| G+C content | 0.46462 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.22 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18246173 91 + 24543557 UUUUCAAUUGUUGAAUCGAAUCAAUAAAGUCGCAGUCCUCUGUGGUCACCUGGCAAUCGCAGUUGCGGUAAGGUAGGUAAGGUGUCCAUUC .......(((((((......)))))))....((((....))))((.(((((.((.(((((....)))))...)).....))))).)).... ( -24.60, z-score = -2.48, R) >droSec1.super_19 240193 82 + 1257711 UUUUCAAUUGUUGAAUCGAAUCAAUAAAGUUGCAGUCCGCUGUGGUCACCUGGCAGUCGCAGUUGCGGUAAGGU---------GUCCAUUC .......(((((((......)))))))....((((....))))((.(((((.((...(((....))))).))))---------).)).... ( -22.90, z-score = -2.07, R) >droYak2.chr3L 8399918 79 - 24197627 UUUUCAAUUGUUGAAUCGAAUCAAUAAAGUCGCAGUCCGCUGUGGUCACCUGG---UCGCAAUUGCGGUAAGGU---------GUCCACUC .......(((((((......)))))))....((.....)).((((.(((((..---((((....))))..))))---------).)))).. ( -26.60, z-score = -3.94, R) >droEre2.scaffold_4784 10119245 79 - 25762168 UUUUCAAUUGUUGAAUCGAAUCCAUAAAGUCGCAGUCCGCUGUGGUCACCUGG---UCGCAGUUGCGGUAAGGU---------GUCCAUUC ..((((.....))))................((((....))))((.(((((..---((((....))))..))))---------).)).... ( -22.00, z-score = -2.18, R) >droAna3.scaffold_13337 4153388 87 - 23293914 UUUUCAAUUGUUGAAUCGAAUCAAUAAGGUUGCAAUCCACUGCGGUCACCCGG---CUAUCGUUGCGGUGAGUUACUUA-GGCGUCCAAUC .......(((((((......)))))))((.(((...((.....))((((((((---(....)))).)))))........-.))).)).... ( -20.30, z-score = -0.43, R) >consensus UUUUCAAUUGUUGAAUCGAAUCAAUAAAGUCGCAGUCCGCUGUGGUCACCUGG___UCGCAGUUGCGGUAAGGU_________GUCCAUUC .......(((((((......))))))).(((((((....)))))).)((((.....((((....))))..))))................. (-13.10 = -13.22 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:22 2011