| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,631,345 – 5,631,395 |
| Length | 50 |
| Max. P | 0.634572 |
| Location | 5,631,345 – 5,631,395 |
|---|---|
| Length | 50 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 74.07 |
| Shannon entropy | 0.49537 |
| G+C content | 0.46416 |
| Mean single sequence MFE | -9.50 |
| Consensus MFE | -5.11 |
| Energy contribution | -5.34 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5631345 50 + 23011544 AGCUCGAUAGUUUCAUUGGCACCUCGAGCUA-----CAUAUCUCUCUCACUUCUG (((((((..(((.....)))...))))))).-----................... ( -10.20, z-score = -2.19, R) >droSim1.chrU 15329144 50 + 15797150 AGCUCGAUAGUUUCAUUGGCACCUCGAGCUA-----AAUAUCUCUCUCACUUCUG (((((((..(((.....)))...))))))).-----................... ( -10.20, z-score = -2.20, R) >droSec1.super_5 3709078 50 + 5866729 AGCUCGAUAGUUUCAUUGGCACCUCGAGCUA-----AAUAUCUCUCUCACUUCUG (((((((..(((.....)))...))))))).-----................... ( -10.20, z-score = -2.20, R) >droYak2.chr2L 8762220 50 - 22324452 AGUUCGAUAGUUCCAUUGCCACCUCGGGCUG-----GAUAUCUCUCUCACUUUUG (((..((.((.((((..(((......)))))-----))...)).))..))).... ( -9.80, z-score = -0.95, R) >droEre2.scaffold_4929 5720234 50 + 26641161 GUUUCGAUAGUUCCAUUGGCACCUCCGGCUG-----AAUAUCUCUCUCACUUUUG .....((((.(((..((((.....))))..)-----))))))............. ( -5.20, z-score = 0.18, R) >droAna3.scaffold_12916 11076674 50 + 16180835 AGUUCGAUAGUUCCUCGGACACCUCGAGCUA-----AAUAUUUCCCAUUCUAGGG (((((((..(((.....)))...))))))).-----.......(((......))) ( -12.00, z-score = -1.59, R) >droWil1.scaffold_180708 3923591 55 - 12563649 CACUCCACAUUCGUAUUGGCACCUCGAGCUACUAGGAGUAGCCCUCCAAAAAUGG .(((((((....))..((((.......))))...)))))......(((....))) ( -8.90, z-score = 0.13, R) >consensus AGCUCGAUAGUUCCAUUGGCACCUCGAGCUA_____AAUAUCUCUCUCACUUCUG (((((((..(((.....)))...)))))))......................... ( -5.11 = -5.34 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:31 2011