| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,089,049 – 18,089,167 |
| Length | 118 |
| Max. P | 0.630250 |
| Location | 18,089,049 – 18,089,167 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.51041 |
| G+C content | 0.47262 |
| Mean single sequence MFE | -32.67 |
| Consensus MFE | -15.02 |
| Energy contribution | -15.65 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18089049 118 + 24543557 UGGGCAGAGGGGAGGCGACAAAGGGGCAUUGCUUGGGGCAUGUUUAGUUAAGUCUUAGGCUUAAGUCUCAGUUCUGGGUAAGCUCGAAUGUUCAUUGUCGAAACA--ACAAUGUUCCAAC ((((((..(..(...((((((..((((.(((((..((((.((...(.((((((.....)))))).)..))))))..)))))))))((....)).))))))...).--.)..)).)))).. ( -36.80, z-score = -2.39, R) >droSim1.chr3L 17415861 118 + 22553184 UGGGCAGAGGGGAGGCGACAAAGGGGCAUUGCUUGGGGCAUGUUUAGUUAAGACUUAGGUUUAAGUCUCAGCUCUGGGUAAGCUCGAAUUUUCAUUGUCGAAACA--AACAUGUUCCAAC ((((((.........((((((..((((.(((((..((((.((........(((((((....)))))))))))))..)))))))))((....)).)))))).....--....)).)))).. ( -35.87, z-score = -2.31, R) >droSec1.super_19 85060 118 + 1257711 UGGGCAGAGGGGAGGCGACAAAGGGGCAUUGCUUGGGGCAUGUUUAGUUAAGACUUAGGUUUAAGUCUCAGUUCUGGGUAAGCUCGAAUGUUCAUUGUCGAAACA--AACAUGUUCCAAC ((((((.........((((((..((((.(((((..((((.((........(((((((....)))))))))))))..)))))))))((....)).)))))).....--....)).)))).. ( -33.37, z-score = -1.66, R) >droYak2.chr3L 8231031 118 - 24197627 UGGGCGGGGGCGAGGGGACAAAGGGGCAUGGCUUGGGGCAUGUUUAGUUAAGUCUUAGGUUUAAGUUUUAGUUCGGGGUAAGCUCGAAUGUUUAUUGUCUAAACA--AGCAUGUUCCAAC ((((((...((..(.((((((.(((((..((((((((((.((......)).))))))))))...))))).(((((((.....))))))).....))))))...).--.)).)).)))).. ( -31.80, z-score = -1.85, R) >droEre2.scaffold_4784 9960359 117 - 25762168 UGGGCAGCGACGCGG-GGCAGGGGGGCAUUGCUUGGGGCAUGUUUAGUUAGGUCUUAGGUUUAGGUCUCAGUUCUGGGUAAGCCCGAAUGUUCAGUGUCUAAACA--ACCAAGUUACAAC (((.....(((((.(-((((...((((.(((((..((((.((.......((..((.......))..))))))))..)))))))))...))))).)))))......--.)))......... ( -37.51, z-score = -1.42, R) >droAna3.scaffold_13337 18148726 97 - 23293914 --------------GAGAGCGGUACAUAUGUCUUCGUAUAUGUUGAGUUAAAGCCUAAAAGAAGGGGCUGAAACCGGGU---------UCUUUAUGGCCUAAACACGAUGAUGUUCCAGA --------------......((.....(((((.((((.......(.(((..(((((........)))))..))))((((---------(......)))))....)))).))))).))... ( -20.70, z-score = 0.47, R) >consensus UGGGCAGAGGGGAGGCGACAAAGGGGCAUUGCUUGGGGCAUGUUUAGUUAAGUCUUAGGUUUAAGUCUCAGUUCUGGGUAAGCUCGAAUGUUCAUUGUCGAAACA__AACAUGUUCCAAC ...............((((((..((((.(((((..((((.((...(.(((((.......))))).)..))))))..)))))))))((....)).)))))).................... (-15.02 = -15.65 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:11 2011