Locus 7877

Sequence ID dm3.chr3L
Location 18,082,694 – 18,082,760
Length 66
Max. P 0.500000
window10839

overview

Window 9

Location 18,082,694 – 18,082,760
Length 66
Sequences 6
Columns 66
Reading direction reverse
Mean pairwise identity 67.47
Shannon entropy 0.63934
G+C content 0.40690
Mean single sequence MFE -14.97
Consensus MFE -4.77
Energy contribution -4.80
Covariance contribution 0.03
Combinations/Pair 1.79
Mean z-score -1.58
Structure conservation index 0.32
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr3L 18082694 66 - 24543557
UUUCAUUCAAUUUCACAGAUUGUGGCUAUUGUUUUGACAAUUGCUCUGUUCGUGGCCGCCCUGUAC
..............((((...((((((((......((((.......)))).)))))))).)))).. ( -13.40, z-score =  -0.90, R)
>droSim1.chr3L 17409189 66 - 22553184
UUUCAUUUAAUUUUACAGAUUGUGGCUAUUGUUUUGACAAUUGCUCUGUUCGUGGCCGCCCUGUAC
.............(((((...((((((((......((((.......)))).)))))))).))))). ( -14.40, z-score =  -1.80, R)
>droSec1.super_19 78669 66 - 1257711
UAUCAUUUAAUUUUACAGAUUGUGGCUAUUGUUUUGACAAUUGCUCUGUUCGUAGCCGCCCUGUAC
.............(((((...((((((((......((((.......)))).)))))))).))))). ( -14.70, z-score =  -2.25, R)
>droWil1.scaffold_180698 2712931 66 - 11422946
UUGUAUUACUUGUAUAAGAUUGUGGCUAUUGUGCUGUCAGUGGCCCUGUUUGUGGCCGCGUUGUAC
...........(((((((((...(((......)))))).(((((((.....).)))))).)))))) ( -18.00, z-score =  -1.48, R)
>droGri2.scaffold_15110 9387372 61 + 24565398
-----UUGCGGAUUGCAGAUAGUUGUGAUUGUCUUAUCGCUAGCGUUAUUUGUUGCCGCCCUUUAU
-----..((((...(((((((((((((((......))))).)))..)))))))..))))....... ( -18.50, z-score =  -2.90, R)
>triCas2.ChLG4 10987616 66 - 13894384
UUUGAUUGGGUUUUUCAGAUUUUGUUGAUAGUCUUAACGGUGAUACUGUUUGCGAUGUCGGUGUAU
.................(((.((((.((((((.(((....))).)))))).)))).)))....... ( -10.80, z-score =  -0.18, R)
>consensus
UUUCAUUGAAUUUUACAGAUUGUGGCUAUUGUUUUGACAAUUGCUCUGUUCGUGGCCGCCCUGUAC
............((((.(((...(((.((((......)))).)))..))).))))........... ( -4.77 =  -4.80 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:09 2011