| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,059,033 – 18,059,083 |
| Length | 50 |
| Max. P | 0.975656 |
| Location | 18,059,033 – 18,059,083 |
|---|---|
| Length | 50 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 67.98 |
| Shannon entropy | 0.53810 |
| G+C content | 0.51341 |
| Mean single sequence MFE | -17.29 |
| Consensus MFE | -10.56 |
| Energy contribution | -10.54 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18059033 50 + 24543557 ---------------UCGAUUUUAGCCAGCAUCGGGGGUUGCACUCUUAUGGAUCUGGCUUUCAU ---------------..((....(((((((((.((((......)))).)))...)))))).)).. ( -15.10, z-score = -2.14, R) >droPer1.super_20 809682 65 + 1872136 UAUUUCUCCGCCUGACUGGGUGGGUGGGAGACCGACCGACAGACCUUAAGGCCUUAAGCUUCGAU .........((((....((((.(((((....)).))).))...))...))))............. ( -18.50, z-score = -0.09, R) >droAna3.scaffold_13337 18126721 50 - 23293914 ---------------UGGAUUUUAGCCAACUUCGAGGGUUGCACUGUAAUGGAGUUGGCUUCCUU ---------------.(((....(((((((((((.((......))....)))))))))))))).. ( -18.10, z-score = -2.83, R) >droEre2.scaffold_4784 9931441 50 - 25762168 ---------------UCGAUUUUAGCCAGUUUUGGGGGUUGCACUCUAAUGGAGCUGGCUUCCAU ---------------........((((((((((.((((.....))))...))))))))))..... ( -16.70, z-score = -1.87, R) >droYak2.chr3L 8199022 50 - 24197627 ---------------UCGAGUUUAGCCAGCUUCGGGGGUUGCACUCUAAUGGAGUUGGCUGCCAU ---------------.......(((((((((((.((((.....))))...))))))))))).... ( -19.80, z-score = -2.30, R) >droSec1.super_19 54583 50 + 1257711 ---------------UCGAUUUUGGCCAGCAUCGGGGGUUGGACUCUAAUGGAGCUGGCUUCCAU ---------------........(((((((..(.((((.....))))...)..)))))))..... ( -16.40, z-score = -1.11, R) >droSim1.chr3L 17384419 50 + 22553184 ---------------UCGAUUUUGGCCAGCAUCGGGGGUUGCACUCUAAUGGAGCUGGCUUCCAU ---------------........(((((((..(.((((.....))))...)..)))))))..... ( -16.40, z-score = -1.16, R) >consensus _______________UCGAUUUUAGCCAGCAUCGGGGGUUGCACUCUAAUGGAGCUGGCUUCCAU .......................(((((((.((.((((.....))))...)).)))))))..... (-10.56 = -10.54 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:07 2011