| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,031,800 – 18,031,851 |
| Length | 51 |
| Max. P | 0.647028 |
| Location | 18,031,800 – 18,031,851 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.43092 |
| G+C content | 0.52102 |
| Mean single sequence MFE | -11.70 |
| Consensus MFE | -8.69 |
| Energy contribution | -9.42 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18031800 51 - 24543557 ---CCCAUUAAAACCUCC---AAAUCCCU--GGGGCGAGCAAGCAGUUGCCCUGAAUUG ---...............---........--(((((((........)))))))...... ( -9.80, z-score = -0.00, R) >droSim1.chr3L 17365852 51 - 22553184 ---CCCAUUAAAACCUCC---AAAUCCCU--GGGGCAACCAAGCAGUUGCCCUGAAUUG ---...............---........--((((((((......))))))))...... ( -13.30, z-score = -2.07, R) >droSec1.super_19 36344 54 - 1257711 ---CCCAUUAAAACCAAAACCAAAUCCCU--GGGGCAACCAAGCAGUUGCCCUGAAUUG ---..........................--((((((((......))))))))...... ( -13.30, z-score = -2.04, R) >droYak2.chr3L 8181266 53 + 24197627 ---UCCAUUAAAACCCAA---AAAUCCCUGGGGGGCAACCAGGCAGUUGCCCUGAAUUG ---..........((((.---.......))))(((((((......)))))))....... ( -17.40, z-score = -1.35, R) >droEre2.scaffold_4784 9913393 51 + 25762168 ---GCCAUUAAAACCCCC---AAAUCCCU--GGAGCAUCCAAGCAGUUGCCCUGAAUUG ---..............(---((.((...--((.(((..........))))).)).))) ( -4.90, z-score = 0.24, R) >droAna3.scaffold_13337 18114630 58 + 23293914 GCAGUCCAGAGUCCCCUCUUCGGAGCCCU-CGGUGCCACCAUGAAGUUGCCCUAAAUUG ........(((....(((....)))..))-)((.((.((......)).))))....... ( -11.50, z-score = -0.32, R) >consensus ___CCCAUUAAAACCCCC___AAAUCCCU__GGGGCAACCAAGCAGUUGCCCUGAAUUG ...............................((((((((......))))))))...... ( -8.69 = -9.42 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:04 2011