| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,030,289 – 18,030,381 |
| Length | 92 |
| Max. P | 0.913917 |
| Location | 18,030,289 – 18,030,381 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 68.24 |
| Shannon entropy | 0.53406 |
| G+C content | 0.52520 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.36 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18030289 92 - 24543557 GCUUCUGUUGCCCCAAAACUU-------CCAACAACUAGCUGCGAUUCGAAUCGCGGCUGUACUCG--------------AAUCUGCAAUCUGCAUUCCCUUCAAUAUGCUAU- ((...(((((...........-------.)))))..((((((((((....))))))))))......--------------.....)).....((((..........))))...- ( -19.70, z-score = -2.46, R) >droPer1.super_20 794290 90 - 1872136 CCCUCUAUGG--AGGGAACUC----UCUGCCCAACUCGAACGCGAAUCG---CGCGGCUGUACUCC-------------CCAUCUGCA--UGGCAGGGCCUGGCAGGGCCCUCG (((((....)--)))).....----..((((..........(((...))---)((((.((......-------------.)).)))).--.))))((((((....))))))... ( -32.90, z-score = -0.45, R) >dp4.chrXR_group6 10884892 90 - 13314419 ACCUCUAUGG--AGGGAACUC----UCUGCCCAACUCGAACGCGAAUCG---CGCGGCUGUACUCC-------------CCAUCUGCA--UGGCAGGGCCUGGCAGGGCCCUCG .........(--((((..(((----(..((((........((((.....---))))(((((.(...-------------......).)--)))).))))..)).))..))))). ( -31.50, z-score = -0.17, R) >droEre2.scaffold_4784 9911821 92 + 25762168 GCUUCCAUUGCCCCAAAACUG-------GCAACAACUAGCUGCGAUUCGAAUCGCGGCUGUACUCG--------------AAUCUGCAAUCUGCAUUCCCUUCAAUAUGCUAU- ((.....(((((........)-------))))....((((((((((....))))))))))......--------------.....)).....((((..........))))...- ( -23.20, z-score = -2.71, R) >droYak2.chr3L 8179583 113 + 24197627 GCCUCUGCCACCCCGAAACUUGCAACUUGCAACAACUAGCUGCGAUUCGCUUCGCGGCUGUACUCGAAUCUGCAAACUGCAAUCUGCAAUCUGCAUUCCCUUCCAUAUGCUAU- ......((......(((...((((..(((((.....(((((((((......)))))))))..........(((.....)))...)))))..)))).....))).....))...- ( -26.60, z-score = -2.65, R) >droSec1.super_19 34789 95 - 1257711 ACUUCUGUUGCCCCAAAACUU----CCAACAACAACUAGCAGCGAUUCGAAUCGCGGCUGUACUCG--------------AAUCUGCAAUCUGCAUUCCCUUCAAUAUGCUAU- .....(((((...........----....)))))..(((((..(((((((...((....))..)))--------------))))(((.....)))............))))).- ( -16.26, z-score = -1.15, R) >droSim1.chr3L 17364290 95 - 22553184 GCUUCUGUUGCCCCAAAACUU----CCAGCAACAACUAGCUGCGAUUCGAAUCGCGGCUGUACUCG--------------AAUCUGCAAUCUGCAUUCCCUUCAAUAUGCUAU- ((...((((((..........----...))))))..((((((((((....))))))))))......--------------.....)).....((((..........))))...- ( -23.32, z-score = -2.93, R) >consensus GCUUCUGUUGCCCCAAAACUU____CCUGCAACAACUAGCUGCGAUUCGAAUCGCGGCUGUACUCG______________AAUCUGCAAUCUGCAUUCCCUUCAAUAUGCUAU_ ....................................(((((((((......)))))))))........................(((.....)))................... (-11.93 = -12.36 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:03 2011