| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,030,205 – 18,030,266 |
| Length | 61 |
| Max. P | 0.590694 |
| Location | 18,030,205 – 18,030,266 |
|---|---|
| Length | 61 |
| Sequences | 8 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Shannon entropy | 0.34194 |
| G+C content | 0.45422 |
| Mean single sequence MFE | -14.14 |
| Consensus MFE | -10.76 |
| Energy contribution | -10.76 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18030205 61 + 24543557 -------------GAAGAACGACAACAAAUCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGGGCUAUAUC -------------..((..(((...((....((((..(((((....)))))..))))))...)))..))..... ( -11.80, z-score = -0.72, R) >droSim1.chr3L 17364206 61 + 22553184 -------------GAAGAACGACAACAAAUCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGCUAUAUC -------------..................((((..(((((....)))))..)))).((......))...... ( -11.50, z-score = -0.82, R) >droSec1.super_19 34705 61 + 1257711 -------------GAAGAACGACAACAAAUCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGCUAUAUC -------------..................((((..(((((....)))))..)))).((......))...... ( -11.50, z-score = -0.82, R) >droYak2.chr3L 8179483 61 - 24197627 -------------GAAGAACGACAACAAAUCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGCUAUAUC -------------..................((((..(((((....)))))..)))).((......))...... ( -11.50, z-score = -0.82, R) >droEre2.scaffold_4784 9911737 61 - 25762168 -------------GAAGAACGACAGCAAAUCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGCUAUAUC -------------..((..(((..(((....((((..(((((....)))))..)))))))..)))..))..... ( -13.60, z-score = -1.13, R) >droAna3.scaffold_13337 18113047 73 - 23293914 GGAGAAGAGAUCGCCAGCAAGGAGAUCGUGUGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGGUCCAU- (((.....((((.((.....)).))))((((((((..(((((....)))))..)))).))))......)))..- ( -25.60, z-score = -2.55, R) >dp4.chrXR_group6 10884817 54 + 13314419 -------------GCAGAACAGGAACAA-UCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGG------ -------------((((((((.((....-)).)))).(((((....))))).....))))........------ ( -13.80, z-score = -1.32, R) >droPer1.super_20 794215 54 + 1872136 -------------GCAGAACAGGAACAA-UCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGG------ -------------((((((((.((....-)).)))).(((((....))))).....))))........------ ( -13.80, z-score = -1.32, R) >consensus _____________GAAGAACGACAACAAAUCGUGUUAUUGACCUAAGUCAAGGGCACUGCACUUGAGCUAUAUC ...............................((((..(((((....)))))..))))................. (-10.76 = -10.76 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:03 2011