| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,029,212 – 18,029,315 |
| Length | 103 |
| Max. P | 0.812074 |
| Location | 18,029,212 – 18,029,315 |
|---|---|
| Length | 103 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.54 |
| Shannon entropy | 0.42362 |
| G+C content | 0.54539 |
| Mean single sequence MFE | -38.51 |
| Consensus MFE | -22.79 |
| Energy contribution | -23.67 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18029212 103 - 24543557 CUGGGCUAU---AGGGGUUAUAGCGUGGGCAAACCAACGUUGUGGCGGAGGUCAGGUCAGGGCCAAAGCACUUGACAUUUCUCCCCCUG----CCACAAGAUCAUAAAUA .(((((...---((((((((((((((((.....)).))))))))))(((((....((((((((....)).))))))...))))))))))----)).))............ ( -41.40, z-score = -2.98, R) >droSim1.chr3L 17363191 102 - 22553184 CUGGGCUAU---AGGGGUUAUAGCGUGGGCAAA-CGACGUUGUGGCGGAGGUCAGGUCAGGGCCAAAGCACUUGACAUUUCUCCCCCUG----CCACGAGAUCAUAAAUA ...(((...---((((((((((((((.(.....-).))))))))))(((((....((((((((....)).))))))...))))))))))----))............... ( -40.50, z-score = -2.68, R) >droSec1.super_19 33668 102 - 1257711 CUGGGCUAU---AGGGGUUAUAGCGUGGGCAAC-CGACGUUGUGGCGGAGGUCAGGUCAGGGCCAAAGCACUUGACAUUUCUCCCCCUG----CCACGAGAUCAUAAAUA ...(((...---((((((((((((((((....)-).))))))))))(((((....((((((((....)).))))))...))))))))))----))............... ( -43.60, z-score = -3.22, R) >droYak2.chr3L 8178401 102 + 24197627 CUGGGCUAU---AGGGGUUAUGGCGUGGGCAAG-CGACGUUGUGCCGGAGGUCAGGUCAGGGCCAAAGCACUUGACAUUUCUGCCCCUG----CCACGGGAUCAUAAAUA ((((((...---(((((.((..((((.(.....-).))))..)).(((((((...((((((((....)).)))))))))))))))))))----)).)))........... ( -36.20, z-score = -0.34, R) >droEre2.scaffold_4784 9910707 102 + 25762168 CUGGGCUUU---AGGGGUUAUGGCGUGGGCCAC-CGACGUUGUGGCAGAGGUCAGGUCAGGGCCAAAGCACUUGACAUUUCUCCCCCUG----CCGCGAUAUCAUAAAUA ...(((...---((((((((..((((.((...)-).))))..)))).((((....((((((((....)).))))))...)))).)))))----))............... ( -37.40, z-score = -0.85, R) >droAna3.scaffold_13337 18112302 103 + 23293914 UUGGGCUAUUACUGGGGUUAAAGUGUGCAGACC-CGACGCUGUAUCGGAGGUCAGGUCAUGGCCAAAGCACUUGACAUUUUUCCCCCGG------GCAGGUUCAUAAAUA .((((((....((((((..(((((((.((((((-.(((.(((...)))..))).))))...((....))...)))))))))..))))))------...))))))...... ( -36.30, z-score = -1.67, R) >droGri2.scaffold_15110 2034107 96 + 24565398 -----CUGC---UGCCCUUGCUGCCCGG------CUAGUGUAAAUUGGAGGUCAGGUCAGGGCCAUGGCACUUGACAUUUCCCCAAUGGGGCACCCGGACCCCAUAAAUA -----..((---.((....)).))((((------...((((..(((((.((....((((((((....)).))))))....)))))))...))))))))............ ( -34.20, z-score = 0.01, R) >consensus CUGGGCUAU___AGGGGUUAUAGCGUGGGCAAC_CGACGUUGUGGCGGAGGUCAGGUCAGGGCCAAAGCACUUGACAUUUCUCCCCCUG____CCACGAGAUCAUAAAUA ............(((((..(((((((.(......).)))))))..)(((((....((((((((....)).))))))...)))))))))...................... (-22.79 = -23.67 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:02 2011