| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,619,866 – 5,619,959 |
| Length | 93 |
| Max. P | 0.577627 |
| Location | 5,619,866 – 5,619,959 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.03 |
| Shannon entropy | 0.58562 |
| G+C content | 0.44261 |
| Mean single sequence MFE | -20.35 |
| Consensus MFE | -7.64 |
| Energy contribution | -7.72 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5619866 93 - 23011544 ---------CAUCCAGCGAAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGG---GCUUGCAAGCUCGUAAAAGGAUACCAGCC-- ---------......((......(((....)))..(((.((....)).)))((((((..........(((.((---(((....))))).)))...)))))).)).-- ( -23.32, z-score = -1.77, R) >droSim1.chr2L 5414235 93 - 22036055 ---------CAUCCAGCGAAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGG---GCUCGCAAGCUCGAAAAAGGAUACCAGCC-- ---------......((......(((....)))..(((.((....)).)))((((((..(((....)))..((---(((....))))).......)))))).)).-- ( -21.90, z-score = -1.28, R) >droSec1.super_5 3697562 93 - 5866729 ---------CAUCCAGCGAAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGG---GCUUGCAAGCUCGAAAAAGGAUACCAGCC-- ---------......((......(((....)))..(((.((....)).)))((((((..(((....)))..((---(((....))))).......)))))).)).-- ( -22.00, z-score = -1.34, R) >droYak2.chr2L 8750068 93 + 22324452 ---------CAUCCAGCGAAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGG---GCUCCGGAGCUCGAAAAAGGAUACCAGCC-- ---------......((......(((....)))..(((.((....)).)))((((((..(((....)))..((---(((....))))).......)))))).)).-- ( -22.90, z-score = -1.35, R) >droEre2.scaffold_4929 5708434 93 - 26641161 ---------CAUCCAGCGAAGAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGG---GGUUCCAAGCUCGCAAAAGGAUACCAGCC-- ---------......((......(((....)))..(((.((....)).)))((((((..(((....))).(.(---(((.....)))).).....)))))).)).-- ( -21.20, z-score = -1.09, R) >droAna3.scaffold_12916 11067050 101 - 16180835 UCCUCGUCGAACCCAACACAAAACGCGGCAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGAG---GGCCUC-AGCCAAAAAAGGGAAUCCAACA-- ...........(((.((((....(((....)))..(((.((....)).))).)))).................---(((...-.)))......))).........-- ( -18.00, z-score = 0.19, R) >droMoj3.scaffold_6500 13978789 90 - 32352404 -------CAUCCAACACACAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAG---------UCUACGCCGAAAACGGGACCAAAAAA- -------..(((....(((....(((....))).)))..............(((((....(((......))---------)..))))).......)))........- ( -15.40, z-score = -0.88, R) >droGri2.scaffold_15252 14073683 85 + 17193109 -------CAUCCAGCACACAAAACGCGGAAGCGAGUGCAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAG---------UCUACCCGAAAAACAA---CAAAA--- -------......((((......(((....))).))))..........((.((((....(((....)))..---------..)))).)).......---.....--- ( -12.90, z-score = -0.98, R) >droVir3.scaffold_12963 3583372 78 - 20206255 ------------------CAGAACGCGGAAGCGACUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAG---------UCUAC-CCGAAAACGGGACCAAAACA- ------------------.(((.(((....))).((((.((....)).))))...................---------))).(-(((....)))).........- ( -18.60, z-score = -2.68, R) >droWil1.scaffold_180708 3908595 87 + 12563649 ------CAUCGUGGCACACAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGGGAAUCCCCCCAGCCC-CAACC------------- ------....(.(((((((....(((....)))..(((.((....)).))).))))..............((((.....)))).))).-)....------------- ( -24.90, z-score = -2.54, R) >droPer1.super_10 1201969 98 + 3432795 ---------CAUCCAACACAAAACGCGGAAGCGACUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGAGCCAGGGCCCCAUCCCACAACCCACAACCCAAAAC ---------......((((....(((....))).((((.((....)).))))))))....................(((......)))................... ( -18.70, z-score = -2.18, R) >dp4.chr4_group4 3377445 107 + 6586962 UCGUCGUCGCAUCCAACACAAAACGCGGAAGCGACUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGAGCGAGGGCCCCAUCCCACAACCCACAACCCAAAAA ..(((.((((.....((((....(((....))).((((.((....)).))))))))...(((....)))...)))).)))........................... ( -24.40, z-score = -2.51, R) >consensus _________CAUCCAACACAAAACGCGGAAGCGAGUGAAAAGCAAUUAUCAGGUGUCAAAAUUUAUAUUAGGG___GCUCCCAAGCCCGAAAACGGAAACCAACC__ .......................(((....)))..(((.((....)).)))........................................................ ( -7.64 = -7.72 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:30 2011