| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,025,981 – 18,026,077 |
| Length | 96 |
| Max. P | 0.874546 |
| Location | 18,025,981 – 18,026,077 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.02 |
| Shannon entropy | 0.40608 |
| G+C content | 0.41552 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -15.81 |
| Energy contribution | -17.82 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18025981 96 + 24543557 CAUACAAUUUUCCAGUUGCAUUAGACAAAAGUUUUUAC-ACAGAAAAUCGUAAAAGUCCGAAACUGCACCUGAAGCUUUGCUGAUGCGCUUGGGUUG ..........(((((.((((((((...((((((((...-.(((....(((........)))..))).....)))))))).)))))))).)))))... ( -24.30, z-score = -1.91, R) >droEre2.scaffold_4784 9907396 97 - 25762168 CAUACAAUUUUCCAGCUGCAUUAGACAAACGUUUUUUCGACAGCAAAUCGCAAAAGUCCGAAACUGCAGCGGAAGCUUUGUUGAUGCGCUUGGGUUG ..........(((((.((((((((.(((..((..(((((((.((.....))....)).)))))..))(((....)))))))))))))).)))))... ( -25.90, z-score = -0.95, R) >droYak2.chr3L 8175036 97 - 24197627 CGCACAAUUUUCCAGUUGCAUUAGACAAAAGUUUUUUUGCCAGAAAAUCGUAAAAGUCCGAAACUGCAGCGGAAGCUUUGCUGAUGCGCUUGGGUUG ..........(((((.((((((((...(((((((((((((.((....(((........)))..)))))).))))))))).)))))))).)))))... ( -26.70, z-score = -0.99, R) >droSec1.super_19 30274 96 + 1257711 CAUACAAUUUUCCAGUUGCAUUAGAAAAAAGUUUUUCC-ACAGAAAAUCGUAAAAGUCCGAAACUGCACCUGAAGCUUUGCUGAUGCGCUUGGGUUG ..........(((((.((((((((...((((((((...-.(((....(((........)))..))).....)))))))).)))))))).)))))... ( -24.30, z-score = -2.01, R) >droSim1.chr3L 17357879 96 + 22553184 CAUACAAUUUUCCAGUUGCAUUAGACAAAAGUUUUUCC-ACAGAAAAUCGUAAAAGUCCGAAACUGCACCUGAAGCUUUGCUGAUGCGCUUGGGUUG ..........(((((.((((((((...((((((((...-.(((....(((........)))..))).....)))))))).)))))))).)))))... ( -24.30, z-score = -1.87, R) >droAna3.scaffold_13337 18108859 74 - 23293914 CACGAAAGCUUCUAGUUGCAUUUGUGAAAAGUUUUCC--------AAGCUU-----UUCCAAACUGCACCUUGCACUUUUCGGGUUG---------- ..((((((.....((.((((((((.((((((((....--------.)))))-----))))))).)))).)).....)))))).....---------- ( -20.10, z-score = -2.38, R) >consensus CAUACAAUUUUCCAGUUGCAUUAGACAAAAGUUUUUCC_ACAGAAAAUCGUAAAAGUCCGAAACUGCACCUGAAGCUUUGCUGAUGCGCUUGGGUUG ..........(((((.((((((((...((((((((.....(((....(((........)))..))).....)))))))).)))))))).)))))... (-15.81 = -17.82 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:01 2011