| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,999,064 – 17,999,119 |
| Length | 55 |
| Max. P | 0.938703 |
| Location | 17,999,064 – 17,999,119 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 91.17 |
| Shannon entropy | 0.18518 |
| G+C content | 0.40748 |
| Mean single sequence MFE | -12.77 |
| Consensus MFE | -10.09 |
| Energy contribution | -10.94 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17999064 55 - 24543557 GACUGGAGUGCGAGUAGCCCUCAAUUACAGUUACAAAACUGUAAGCAGUCGUAAA ((((((((.((.....)).)))..((((((((....)))))))).)))))..... ( -20.30, z-score = -4.49, R) >droSim1.chr3L 17329955 55 - 22553184 UACUGGAGUGCGAGUAACCCUCAAUAACAGUUACAAAACUGUAAGCAGUCGUAAA .....((.((((((.....)))....((((((....))))))..))).))..... ( -14.10, z-score = -2.57, R) >droSec1.super_19 3956 55 - 1257711 UACUGGAGUGCGAGCAACCCUCAAUAACCGUUACAAAACUGUAAGCAGUCGUAAA .....((.((((((.....)))........(((((....)))))))).))..... ( -10.80, z-score = -1.08, R) >droYak2.chr3L 8146791 55 + 24197627 UACUGGAGUGCGAGUAACCCUCAAUAACAGUUACAAAACUGUAAGCAGUCGUAAA .....((.((((((.....)))....((((((....))))))..))).))..... ( -14.10, z-score = -2.57, R) >droEre2.scaffold_4784 9880425 55 + 25762168 UACUGGAGUGCGAGUAACCCUCAAUAACAGUUACAAAACUGUAAGCAGUCGCAAA ...((((.((((((.....)))....((((((....))))))..))).)).)).. ( -14.40, z-score = -2.57, R) >droAna3.scaffold_13337 18085447 54 + 23293914 CACUG-CCUGCGAAUAACCCUCAAUAACAGUUACAAAACUGUAAGCAAUCGUAAA ...((-(.(((((.......))....((((((....))))))..)))...))).. ( -7.20, z-score = -1.60, R) >droWil1.scaffold_180955 382688 51 + 2875958 ----GAAGUGCGAAUAACCCUCAAUAACAGUUACAAAACUGUAAGCAGUCGUAAA ----((..(((((.......))....((((((....))))))..))).))..... ( -8.50, z-score = -2.02, R) >consensus UACUGGAGUGCGAGUAACCCUCAAUAACAGUUACAAAACUGUAAGCAGUCGUAAA .....((.((((((.....)))....((((((....))))))..))).))..... (-10.09 = -10.94 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:35:00 2011