| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,987,178 – 17,987,243 |
| Length | 65 |
| Max. P | 0.938713 |
| Location | 17,987,178 – 17,987,243 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 88.98 |
| Shannon entropy | 0.18363 |
| G+C content | 0.47167 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -20.29 |
| Energy contribution | -20.29 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17987178 65 + 24543557 UAAAAGAUCGCUGCAUGCUGAUA-------CACUUGCGUUCAACAAAGAGUGCAGAUGCAUGGUGGUCUACA ....((((((((((((.(((.((-------(.(((..........))).))))))))))..))))))))... ( -19.40, z-score = -1.48, R) >droEre2.scaffold_4784 9868625 72 - 25762168 UGGAAGAUCGCUGCAUGCUGAUAGCUGAUAUAUUCGCGUUCAACAAAGAGUGCAGAUGCGUGGUGGUCUACA ..(.(((((((..(..((.....)).....(((..((((((......))))))..))).)..))))))).). ( -19.80, z-score = -0.18, R) >droYak2.chr3L 8134639 72 - 24197627 CGAAAGAUCGCUGCAUGCUGAUAGCCGAUACAUUUGCGUUCAACAAAGAGUGCAGAUGCGUGGUGGUCUACA ....(((((((..(..((.....)).....(((((((((((......))))))))))).)..)))))))... ( -24.60, z-score = -1.99, R) >droSec1.super_89 90016 65 + 98649 UGAAAGAUCGCUGCAUGCUGAUA-------CAUUUGCGUUCAACAAAGAGCGCAGAUGCGUGGUGGUCUACA ....(((((((..(((....)).-------(((((((((((......))))))))))).)..)))))))... ( -25.80, z-score = -3.20, R) >droSim1.chr3L 17316807 65 + 22553184 UGAAAGAUCGCUGCAUGCUGAUA-------CAUUUGCGUUCAACAAAGAGCGCAGAUGCGUGGUGGUCUACA ....(((((((..(((....)).-------(((((((((((......))))))))))).)..)))))))... ( -25.80, z-score = -3.20, R) >consensus UGAAAGAUCGCUGCAUGCUGAUA_______CAUUUGCGUUCAACAAAGAGUGCAGAUGCGUGGUGGUCUACA ....(((((((..(((((.............((((((((((......))))))))))))))))))))))... (-20.29 = -20.29 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:58 2011