| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,977,213 – 17,977,306 |
| Length | 93 |
| Max. P | 0.999511 |
| Location | 17,977,213 – 17,977,306 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 67.56 |
| Shannon entropy | 0.52072 |
| G+C content | 0.51987 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -13.45 |
| Energy contribution | -13.45 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.96 |
| SVM RNA-class probability | 0.999511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17977213 93 - 24543557 CCUCAUUUUCCUCUGCA----UCUAAUUUUCGUAGUCGUUGCACGCGCUUUCAUU-----------GCAUGCGUGUGCACUGC-AAUCCCCCUUCCCACGCCCCUUUAA-- .................----..........(((((....((((((((.......-----------....)))))))))))))-.........................-- ( -18.50, z-score = -3.30, R) >droSim1.chr3L 17302434 94 - 22553184 CCUCAUCACCCUCUGCA----UCUGAUUUUCGUAGUCGUUGCACGCGCUUUCAUU-----------GCAUGCGUGUGCACUGCAAACCCCUAUUCCCCCGCCCCUUUUA-- .............((((----...((((.....))))..(((((((((.......-----------....))))))))).)))).........................-- ( -20.00, z-score = -3.27, R) >droSec1.super_89 80224 87 - 98649 CCUCAUCACCCUCUGCA----UCUGAUUUUCGUAGUCGUUGCACGCGCUUUCAUU-----------GCAUGCGUGUGC-------ACCCCUAUUCCCCCGCCCCUUCAA-- ..............((.----...((((.....))))..(((((((((.......-----------....))))))))-------).............))........-- ( -18.00, z-score = -3.17, R) >droYak2.chr3L 8124752 95 + 24197627 ----AUUUUCCCCCUCAACUCUCCUGAUUUCGUAGUCGUUGCACGCGCUUUCGUU-----------GCAUGCGUGUGCACUGC-AAUCCCCCCUGCCCCGCCCCUCUAACC ----...........................(((((....((((((((.......-----------....)))))))))))))-........................... ( -18.50, z-score = -3.09, R) >droWil1.scaffold_180955 352154 102 + 2875958 ----AUCUAACCAUCUAUCCCAUUUGAUUUGGUAGUCACAGCACGCGCUUUCAUUUUGAAGAAAAGCCAUGCGUGUGCAUG---GUUGCUUCCUCUCUCUCUCUUUCUA-- ----...(((((((..........(((((....)))))..((((((((.....((((....)))).....)))))))))))---)))).....................-- ( -23.60, z-score = -2.25, R) >consensus CCUCAUCUCCCUCUGCA____UCUGAUUUUCGUAGUCGUUGCACGCGCUUUCAUU___________GCAUGCGUGUGCACUGC_AAUCCCUCUUCCCCCGCCCCUUUAA__ ........................................((((((((......................))))))))................................. (-13.45 = -13.45 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:57 2011