| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,968,623 – 17,968,722 |
| Length | 99 |
| Max. P | 0.829527 |
| Location | 17,968,623 – 17,968,722 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 61.04 |
| Shannon entropy | 0.80880 |
| G+C content | 0.47526 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -8.03 |
| Energy contribution | -7.96 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17968623 99 - 24543557 ---------AUGUGCCUCUCUUUCGGCAGCAGUUGCCCUUCGCUGGC---ACAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUUAUUGUCGUGGCUCCG--AUUCCGGAGUUC ---------.((((((........(((((...))))).......)))---)))....((((((((.((((....))))))))))))......(((((((--....))))))). ( -30.36, z-score = -2.17, R) >droSim1.chr3L 17293909 99 - 22553184 ---------AUGUGCCUCUCUUUCGGCGGCAGUUGCCCUUCGCUGGC---ACAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUUAUUGUCGUGGCUCCG--AUUCCGGAGUUC ---------.((((((........((.(((....))))).....)))---)))....((((((((.((((....))))))))))))......(((((((--....))))))). ( -30.12, z-score = -1.72, R) >droSec1.super_89 71820 99 - 98649 ---------AUGUGCCUCUCUUUCGGCGGCAGUUGCCCUUCGCUGGC---ACAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUUAUUGUCGUGGCUCCG--AUUCCGGAGUUC ---------.((((((........((.(((....))))).....)))---)))....((((((((.((((....))))))))))))......(((((((--....))))))). ( -30.12, z-score = -1.72, R) >droYak2.chr3L 8116002 99 + 24197627 ---------AUGUGCCUCUCUUUCGGCAGCAGUUGCCCUUCGCUGGC---GCAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUUAUUGUCGUGGCUCCG--AUUCCGGAGCUC ---------.((((((........(((((...))))).......)))---)))....((((((((.((((....))))))))))))......(((((((--....))))))). ( -32.46, z-score = -2.27, R) >droEre2.scaffold_4784 9850126 99 + 25762168 ---------AUGUGCCUCUCUUUCGGCAGCAGUUGCCCUUCGCUGGC---GCAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUUAUUGUCGUGGCUCCG--AUUCCGGAGUUC ---------.((((((........(((((...))))).......)))---)))....((((((((.((((....))))))))))))......(((((((--....))))))). ( -29.96, z-score = -1.74, R) >droAna3.scaffold_13337 18056403 92 + 23293914 ---------CUCUUCUCGUGCUCCAUCUGCAGUUGCCCUUCGCUGGC-AAAGAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUUA------UGGCUCC-----CCGAGAGUUC ---------...((((((.(((..........(((((.......)))-)).......((((((((.((((....)))))))))))------))))...-----.))))))... ( -21.20, z-score = -0.79, R) >dp4.chrXR_group6 10825826 96 - 13314419 -----AUGUCCCUUUUGCUGAUUCGCUUGCAGUUGCCCUUCGCAGU----GCGA------AAAUGUGAAAGGUAUUUCCGUUUU--CGGCAGUGCUCCAUCAAUCCCUCUCUC -----......((((..(...(((((((((...........)))).----))))------)...)..))))(((((.(((....--))).))))).................. ( -23.00, z-score = -1.63, R) >droPer1.super_20 736046 96 - 1872136 -----AUGUCCCUUUUGCUGAUUCGCUUGCAGUUGCCCUUCGCAGU----GCGA------AAAUGUGAAAGGUAUUUCCGUUUU--CGGCAGUGCUCCAUCAUUCCCUCUCUC -----......((((..(...(((((((((...........)))).----))))------)...)..))))(((((.(((....--))).))))).................. ( -23.00, z-score = -1.65, R) >droWil1.scaffold_180955 341756 108 + 2875958 CUCCUGUUUCUCGUCUUGUUCUGCUUUGCGAGCUGCCCUUCGCAUAA-AUGUUAAAUGCGAAAUGUGAAAGGUAUUUCCGUUC----AAUAUGAUUUCUUUUCUUCGGAGCUC ((((.((..(((((...(.....)...)))))..))..(((((((..-.......)))))))...((((.((.....)).)))----)..................))))... ( -21.70, z-score = -0.92, R) >droVir3.scaffold_13049 4030436 91 + 25233164 ------GUGUUGUUCUUUGUUGUUUUCG---GUUGCCCUUCGCAGCGCUUGACUGUUGAGAAAUGUGAAAGGCAUUUCCUUUU----GGCCCAUUAGCGAGUUC--------- ------...(((((...((..(((...(---(.((((.((((((...((..(...)..))...)))))).))))...))....----))).))..)))))....--------- ( -20.10, z-score = 0.10, R) >droMoj3.scaffold_6680 9164809 89 + 24764193 -------GUUUCUUCUUAUUCGUUUUUG---GUUGCCCUUCGCAGCGCUUGGCUGGUGAGAAAUGUGAAAGGUAUUUCCGCUC----GGCCCA-AACAGAGUUC--------- -------..........((((...((((---(((((.....)))))....((((((((.((((((.......))))))))).)----))))))-))..))))..--------- ( -23.50, z-score = -0.48, R) >droGri2.scaffold_15110 22451338 83 - 24565398 -------UAUUUUUUUUGCAUUCUUUUG---GUUGCCCUUCGCAG-------CUGGUGAGAAAUGUGAAAGGUAUUUCCGUUU----GCCCCAUUAUCGAGUUC--------- -------......(((..((((((((..---(((((.....))))-------)..).))).))))..)))((((........)----)))..............--------- ( -19.70, z-score = -1.72, R) >consensus _________AUGUUCUUCUCUUUCGGCGGCAGUUGCCCUUCGCAGGC___GCAAAAUGUGAAAUGUGAAAGGUAUUUCCGUUUU___GUCGUGGCUCCG__AUUCCGGAGUUC .................................((((.(((((.....................))))).))))....................................... ( -8.03 = -7.96 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:54 2011