| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,961,320 – 17,961,387 |
| Length | 67 |
| Max. P | 0.865852 |
| Location | 17,961,320 – 17,961,387 |
|---|---|
| Length | 67 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 86.06 |
| Shannon entropy | 0.24942 |
| G+C content | 0.38011 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -10.60 |
| Energy contribution | -11.56 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17961320 67 + 24543557 CAUAG----CCCAUUAAUGUUUGGUGGUGGUAAGCAAAAGCAUAAAACUAGUAGUCAACAUUAAUGAGGGG .....----((((((((((((((.((((..((.((....)).))..)))).))...)))))))))).)).. ( -18.40, z-score = -2.87, R) >droEre2.scaffold_4784 9842567 70 - 25762168 CAGCCAUACCCCAUUAAUGUUUGCUGGUUGUAAACAAAAGCAUAAAACUAGUAGUCAAA-UUGAUGGGGGA ........((((((((((..(((((((((................)))))))))....)-))))))))).. ( -23.39, z-score = -3.47, R) >droYak2.chr3L 8108307 71 - 24197627 CAGCCAGACCGCAUUAAUGUUUGUUGCUUGUAAACAAGAGCAUAAAACAAGUAGUCAAAAUUGAUGGGGGU ........((.(((((((.((((((((((((...............)))))))).))))))))))).)).. ( -18.96, z-score = -2.34, R) >droSec1.super_89 64600 71 + 98649 CAUAGAGAUCCCAUUAAUGUUUGGUGGUGGUAAACAAAAGCAUAAAACUAGUAGUCAAAAUUAAUGGGGGG ........((((((((((.(((((((.((((...............)))).)).))))))))))))))).. ( -16.46, z-score = -2.47, R) >droSim1.chr3L 17286717 71 + 22553184 CAUAGAGAUCCCAUUAAUGUUUGGUGGUGGUAAACAAAAGCAUAAAACUAGUAGUCAAAAUUAAUGGGGGG ........((((((((((.(((((((.((((...............)))).)).))))))))))))))).. ( -16.46, z-score = -2.47, R) >consensus CAUAGAGACCCCAUUAAUGUUUGGUGGUGGUAAACAAAAGCAUAAAACUAGUAGUCAAAAUUAAUGGGGGG ........((((((((((.(((((((.((((...............)))).)).))))))))))))))).. (-10.60 = -11.56 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:53 2011