Locus 7861

Sequence ID dm3.chr3L
Location 17,940,707 – 17,940,762
Length 55
Max. P 0.757598
window10819

overview

Window 9

Location 17,940,707 – 17,940,762
Length 55
Sequences 3
Columns 55
Reading direction reverse
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.65455
Mean single sequence MFE -22.80
Consensus MFE -22.80
Energy contribution -22.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.60
SVM RNA-class probability 0.757598
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17940707 55 - 24543557
AGUCGACGGCCUGCAGUCGACGUCGCAGUCGGCCGAGCUGAUAGCAGUCGGCUAC
(((((((((((.((.(.((....))).)).))))..((.....)).))))))).. ( -22.80, z-score =  -1.19, R)
>droSec1.super_89 44494 55 - 98649
AGUCGACGGCCUGCAGUCGACGUCGCAGUCGGCCGAGCUGAUAGCAGUCGGCUAC
(((((((((((.((.(.((....))).)).))))..((.....)).))))))).. ( -22.80, z-score =  -1.19, R)
>droSim1.chr3L 17266487 55 - 22553184
AGUCGACGGCCUGCAGUCGACGUCGCAGUCGGCCGAGCUGAUAGCAGUCGGCUAC
(((((((((((.((.(.((....))).)).))))..((.....)).))))))).. ( -22.80, z-score =  -1.19, R)
>consensus
AGUCGACGGCCUGCAGUCGACGUCGCAGUCGGCCGAGCUGAUAGCAGUCGGCUAC
(((((((((((.((.(.((....))).)).))))..((.....)).))))))).. (-22.80 = -22.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:52 2011