| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,937,006 – 17,937,076 |
| Length | 70 |
| Max. P | 0.545363 |
| Location | 17,937,006 – 17,937,076 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 78.77 |
| Shannon entropy | 0.41442 |
| G+C content | 0.50893 |
| Mean single sequence MFE | -19.67 |
| Consensus MFE | -11.80 |
| Energy contribution | -11.50 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17937006 70 + 24543557 GUUCAAAACCGAGACAUAAGUGGCCUUCGUGUUGCAUAAGUUG-CAUCGAAGGUCUCGCGCUGGAAGUUAC ........((.((......(.((((((((...((((.....))-)).)))))))).)...))))....... ( -20.10, z-score = -1.53, R) >droSim1.chr3L 17261840 70 + 22553184 GUUCAAAACCGAGACAUAAGUGGCCUUCGCGUUGCAUAAGUUG-CAUCGAAGGUCUCGCACUGGAAGUUAC .(((.....((((.((....))(((((((...((((.....))-)).))))))))))).....)))..... ( -18.80, z-score = -1.20, R) >droSec1.super_89 40831 70 + 98649 GUUCAAACCCGAGACAUAAGUGGCCUUCGCGUUGCAUAAGUUG-CAUCGAAGGUCUCGCACUGGAAGUUAC .(((.....((((.((....))(((((((...((((.....))-)).))))))))))).....)))..... ( -18.80, z-score = -1.06, R) >droYak2.chr3L 8080911 70 - 24197627 GUUCAGAACCGAGACAUAAGUGGCCUUCGCGUUGCAUAAGUUG-CAACGAAGGUCUCGCGCUGGAAGUUAC .(((((...((((((....(((.....)))((((((.....))-))))....))))))..)))))...... ( -24.50, z-score = -2.43, R) >droEre2.scaffold_4784 9818026 70 - 25762168 GUUCAAAACCGAGACAUAAGUGGCCUUCGCGUUGCAUAAGUUG-CGCCGAAGGUCUCGAGCUGGAAGUUAC ((((.........((....))(((((((((((.((....)).)-)).))))))))..)))).......... ( -20.30, z-score = -1.06, R) >droAna3.scaffold_13337 18026571 56 - 23293914 --------GAUUGGCGAGAAUGGCCUUCGGGUUGCAUAAGUCGGCAAUGAGGGACGGACUCACU------- --------.((((.(((..((((((....)))..)))...))).))))(((.......)))...------- ( -15.50, z-score = -0.81, R) >consensus GUUCAAAACCGAGACAUAAGUGGCCUUCGCGUUGCAUAAGUUG_CAUCGAAGGUCUCGCGCUGGAAGUUAC ........((.((......(.((((((((...((((.....)).)).)))))))).)...))))....... (-11.80 = -11.50 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:51 2011