| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,932,028 – 17,932,117 |
| Length | 89 |
| Max. P | 0.997148 |
| Location | 17,932,028 – 17,932,117 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 86.69 |
| Shannon entropy | 0.24123 |
| G+C content | 0.43182 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -20.88 |
| Energy contribution | -20.47 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.23 |
| Mean z-score | -3.25 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.05 |
| SVM RNA-class probability | 0.997148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17932028 89 + 24543557 -CCCAAGUAGCCUCACGUGAGGCUGCGAAUUAAAAAUCCAAACAUUUAUAAUUGCUGUU----CAUUAACCGAACGAAAAA-CGGCCUAAAGCAC-- -.....((((((((....)))))))).(((((.((((......)))).)))))((((((----..((........))..))-)))).........-- ( -20.10, z-score = -2.65, R) >droAna3.scaffold_13337 18022458 94 - 23293914 -CCGAAAUAGCCUCACGUGAGGCUGUGAAUUAAAAAGCCAAAUAAUUAUGAUGGCUAUUUGCUCAUUAAACGGUUGAAAAAACGGCCUAAGCCUC-- -(((..((((((((....))))))))((..((((.(((((...........))))).)))).))......)))..........(((....)))..-- ( -25.40, z-score = -2.99, R) >droEre2.scaffold_4784 9813496 91 - 25762168 -CCGAAAUAGCCUCACGUGAGGCUGUGAAUUACCAGUCCAAACAUUUGUAAUUGCUGUU----CAUUAACCGGCCGAAAAG-CGGCCUAAAGCGCCU -.....((((((((....)))))))).((((((.(((......))).))))))((((((----....))).(((((.....-)))))...))).... ( -26.00, z-score = -2.22, R) >droYak2.chr3L 8076194 89 - 24197627 -CCGAAAUAGCCUCACGUGAGGCUGUGAAUUAAAAAUACAAACAUUUAUAAUUGCUGUU----CACUAACCGGCCGAAAAG-CGGCCUAAAGCAC-- -.....((((((((....)))))))).(((((.((((......)))).)))))((((((----....))).(((((.....-)))))...)))..-- ( -24.30, z-score = -3.20, R) >droSec1.super_89 35884 89 + 98649 -CCCAAGUAGCCUCACGUGAGGCUGCGAAUUAAAAAUCCAAACAUUUAUAAUUGCUGUU----CAUUAACCGGCCGAAAAA-CGGCCUAAAGCAC-- -.....((((((((....)))))))).(((((.((((......)))).)))))((((((----....))).(((((.....-)))))...)))..-- ( -26.40, z-score = -4.03, R) >droSim1.chr3L 17256069 90 + 22553184 CCCAAAGUAGCCUCACGUGAGGCUGCGAAUUAAAAAUCCAAACAUUUAUAAUUGCUGUU----CAUUAAACGGCCGAAAAA-CGGCCUAAAGCAC-- ......((((((((....)))))))).(((((.((((......)))).)))))((((((----.....)))(((((.....-)))))...)))..-- ( -27.50, z-score = -4.44, R) >consensus _CCGAAAUAGCCUCACGUGAGGCUGCGAAUUAAAAAUCCAAACAUUUAUAAUUGCUGUU____CAUUAACCGGCCGAAAAA_CGGCCUAAAGCAC__ ......((((((((....)))))))).............................................(((((......))))).......... (-20.88 = -20.47 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:49 2011