| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,921,480 – 17,921,575 |
| Length | 95 |
| Max. P | 0.923764 |
| Location | 17,921,480 – 17,921,575 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.57 |
| Shannon entropy | 0.53187 |
| G+C content | 0.62940 |
| Mean single sequence MFE | -40.13 |
| Consensus MFE | -21.19 |
| Energy contribution | -22.93 |
| Covariance contribution | 1.74 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17921480 95 + 24543557 AGCUGUGACCUUG---GCGCACACCUCGCUGCAUUGACGUACCGGC----CACGGUCACGGCCAUGGCCACGGUCAUCAUCGCAGUGAGCUGUGCUGCCAAC ..........(((---(((((((.((((((((..(((.(.((((((----((.(((....))).)))))..)))).)))..)))))))).))))).))))). ( -49.40, z-score = -4.19, R) >droSim1.chr3L 17245460 97 + 22553184 AGCUGUGACCACAC-ACCGCACACCUCGCUGCAUUGACGUACCGGC----CACGGUCACGGCCAUGGCCACGGUCAUCAUAGCUGUGAGCUGUGCUGCUAAC (((((((....)))-)..(((((.(((((.((..(((.(.((((((----((.(((....))).)))))..)))).)))..)).))))).))))).)))... ( -41.60, z-score = -2.66, R) >droSec1.super_89 25339 95 + 98649 AGCUGUGACCUUG---CCGCACACCUCGCUGCAUUGACGUACCGGC----CACGGUCACGGCCAUGGCCACGGUCAUCAUAGCUGUGAGCUGUGCUGCCAAC ............(---(.(((((.(((((.((..(((.(.((((((----((.(((....))).)))))..)))).)))..)).))))).))))).)).... ( -39.60, z-score = -1.77, R) >droYak2.chr3L 8064415 95 - 24197627 AGCUGUGACCUUG---CCACACACCUCGCUGCAUUGACGUACCGGC----CACGGUCACGGCCAUGGCCACGGUCACCAUCGCUGGGGGCUGUGCUGCCAAC .(((((((((..(---((....((.(((......))).))...)))----...)))))))))..(((((((((((.(((....))).)))))))..)))).. ( -38.90, z-score = -0.91, R) >droEre2.scaffold_4784 9802477 95 - 25762168 AGCUGUGACCUUG---CCGCGCACCUCGCUGCAUUGACGUACCGGC----CACGGUCACGGCCAUGGCCACGGUCAUCAUCGCAGCGAGCUGGGCUGCCAGC .((((.......(---(.((.((.((((((((..(((.(.((((((----((.(((....))).)))))..)))).)))..)))))))).)).)).)))))) ( -46.51, z-score = -2.41, R) >droAna3.scaffold_13337 18011736 99 - 23293914 AGCUGUGACCUUGAUGGCGCACACCUCGCUGCAUUGACGUACCGGCGGC-CACGGUCACGGCCAUGGCCAUAAUUGUA--CGUAGCUGGCCGUGUGGGUGUC ....(((.((.....)))))(((((((((.((....((((((....(((-((.(((....))).)))))......)))--))).....)).))).)))))). ( -39.60, z-score = -0.11, R) >droMoj3.scaffold_6680 9108384 83 - 24764193 GGCAUUGGCCUUG---UUGCAUGCCCCUUCGCAUUGACGUAGUGACCCUGAGUGGGCGCUGCCACCCACCCGGUUGCUUUGGCAUU---------------- (((....)))...---.(((((((......))))...((.((..(((..(.(((((........)))))).)))..)).)))))..---------------- ( -25.30, z-score = 0.71, R) >consensus AGCUGUGACCUUG___CCGCACACCUCGCUGCAUUGACGUACCGGC____CACGGUCACGGCCAUGGCCACGGUCAUCAUCGCAGUGAGCUGUGCUGCCAAC ..................(((((.(((((.((..((((((((((........)))).))(((....)))...)))).....)).))))).)))))....... (-21.19 = -22.93 + 1.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:48 2011