| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,911,527 – 17,911,621 |
| Length | 94 |
| Max. P | 0.888283 |
| Location | 17,911,527 – 17,911,621 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 61.40 |
| Shannon entropy | 0.54636 |
| G+C content | 0.48156 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17911527 94 - 24543557 AUUUGGAGAACCACA-GCAUGUUGGUUGUCAUAUCAAGGUGAGGUAUGCGGCAGCGAGUGCCG-AGAACCCUGAUG-CAAGUGCAACUUGCGUUAAC .....((.(((((..-......))))).))............(((...(((((.....)))))-...))).(((((-((((.....))))))))).. ( -28.60, z-score = -0.90, R) >droSec1.super_86 65753 89 - 128402 ------AGAACCCUAGGAAUGCUUACCAUAUUGAUUAAGUGAGCUGUGCGGCUACGAGAGCCGUAGUAGUAGAGCGAGAAGUA-GCCUCGC-UUAAC ------......(((.....((((((............))))))..(((((((.....))))))).)))..(((((((.....-..)))))-))... ( -25.70, z-score = -1.75, R) >droEre2.scaffold_4845 20419829 91 + 22589142 -----GAGAACAUCCGGAAUGUUCUUCAUACUUACUAGGUGAGCUAUGCGGCUACGAGAGCCGCAUCAACCAAGCGGGAAAUAUAUCUUGC-UUAAC -----((((((((.....))))))))...........(((.....((((((((.....))))))))..)))((((((((......))))))-))... ( -30.70, z-score = -3.83, R) >consensus _____GAGAACCACAGGAAUGUUCAUCAUAAUAACUAGGUGAGCUAUGCGGCUACGAGAGCCG_AGAAACCAAGCG_GAAGUA_AACUUGC_UUAAC ......................................(((((...(((((((.....)))))))........((.....))....)))))...... (-10.80 = -10.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:47 2011