| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,896,612 – 17,896,723 |
| Length | 111 |
| Max. P | 0.663354 |
| Location | 17,896,612 – 17,896,723 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.63 |
| Shannon entropy | 0.46933 |
| G+C content | 0.34867 |
| Mean single sequence MFE | -26.57 |
| Consensus MFE | -11.94 |
| Energy contribution | -11.25 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17896612 111 - 24543557 UUUUUAAGAGUAUAAUCUGUGUGAUAUUCAAUUCACAUGCCUUAAUUUAAAAUGCAAAUGCAAUUG------AGGCAGUUGAUCUCGGU--AGGCCAGUGAUCUAUUGAUCUACUGAUC ......(((......)))((((((........))))))((((((((......(((....)))))))------))))........(((((--((..(((((...)))))..))))))).. ( -30.10, z-score = -2.64, R) >droSim1.chr3L 17223797 111 - 22553184 UUUUUAAGAGUAUAAUCUGUGUGAGACUCAAUUCACAUGCCUUAAUUUAAAAUGCAAAUGCAAUUG------AGGCAGUUGAUCUCGGU--AGGCCAGUGAUCUUUUGAUCCACUGAUC ......(((......)))...(((((.(((((.....(((((((((......(((....)))))))------)))))))))))))))..--.(..((((((((....))).)))))..) ( -28.90, z-score = -1.87, R) >droSec1.super_0 9926292 111 - 21120651 UUUUUAAGAGUAUAAUCUGUGUGAGACUCAAUUCACAUGCCUUAAUUUAAAAUGCAAAUGCAAUUG------AGGCAGUUGAUCUCGGU--AGGCCAGUGAUCUUUUGAUCCACUGAUC ......(((......)))...(((((.(((((.....(((((((((......(((....)))))))------)))))))))))))))..--.(..((((((((....))).)))))..) ( -28.90, z-score = -1.87, R) >droYak2.chr3L 8041776 116 + 24197627 UUCUUAAGA--AUAAUCUGUGUGGGAAUCAAUUCACAUGCUUUAAUCUAAAAUGCAAAUGCAAAUGCAAUUGAGUCCGUUGAUCUCGGU-AGGAUCAGAGAUCUCUUGAUCCACUGAUU ......(((--.(((..((((((((......))))))))..))).)))......(((.(((....))).)))............(((((-.((((((((....)).))))))))))).. ( -26.50, z-score = -0.87, R) >droEre2.scaffold_4784 9779589 91 + 25762168 UUCUUAAGA--AUAAUCUGUGUGAGAUUCAAUUCACAUGCUUU-AUUUAAAAUGCAAAUGCAAUUG-------------------------AGGCCAGUGAUCUUUUGAUCCACUGAUU .((((((((--((((..((((((((......))))))))..))-))))....(((....))).)))-------------------------))).((((((((....))).)))))... ( -23.20, z-score = -2.52, R) >droAna3.scaffold_13337 17991128 106 + 23293914 --CUUAGAA----AACUUAAACCUGAUCCAGUUCUCAUACUAUAAU-UAAAAUGCAAAUGCGGUCG------AUUUAGUUGAUCUCCAAGGGGGUCAAAAUUUUGUUGAUCUUUUGAUU --....((.----((((............)))).)).......(((-(((((.((....))(((((------((....((((((((....))))))))......))))))))))))))) ( -21.80, z-score = -1.16, R) >consensus UUCUUAAGA__AUAAUCUGUGUGAGAUUCAAUUCACAUGCCUUAAUUUAAAAUGCAAAUGCAAUUG______AGGCAGUUGAUCUCGGU__AGGCCAGUGAUCUUUUGAUCCACUGAUC ...............((((((((((......)))))))..............(((....))).............................))).((((((((....))).)))))... (-11.94 = -11.25 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:47 2011