| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,881,238 – 17,881,353 |
| Length | 115 |
| Max. P | 0.558287 |
| Location | 17,881,238 – 17,881,353 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 67.94 |
| Shannon entropy | 0.62002 |
| G+C content | 0.32630 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.77 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.53 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17881238 115 - 24543557 UAACGGUCCUUAUAUGCGCUUCAAGAAAGU--GGUUCUUAACGUAAUCGUUAAAAUUUUUUUAUUGAACCUCUUCGGUAACCAUAAAGUAAUUUG-UUUUUUCGAGUGCUUUUCAUUU ...............((((((.((((((((--(((..((((((....))))))........(((((((....))))))))))))(((....))).-)))))).))))))......... ( -21.70, z-score = -1.60, R) >droSim1.chr3L 17208414 115 - 22553184 UAAUGGUCCUUAUAUGCGCUUUAGGAAAGU--GGUUCUUAACGUAAUCGUUUAAAU-UUUUUAUUGAACCUCUUCGGUAGCCAUAUAGUAAUUUGAUUUUUUCGAGUGCUUUUCAUUU .(((((....((((((.(((...((..((.--(((((..((((....)))).....-........))))).))))...)))))))))(((.(((((.....))))))))...))))). ( -21.36, z-score = -0.90, R) >droSec1.super_0 9910555 114 - 21120651 UAAUGGUCCUUAUAUGCGCUUUAGGAAAGU--GGUUCUUAACGUAAUCGCUUAAAU-UUUUUAUUGAACCUCUUCGGUAGCCAUAAAGUAAUUUG-UUUUUUCGAGUGCUUUUCAUUU ...............((((((..((.((((--((((........))))))))....-...((((((((....))))))))))(((((....))))-)......))))))......... ( -19.10, z-score = -0.06, R) >droYak2.chr3L 8026522 114 + 24197627 UAACGGCCCUUUUAUGCGCUUUAAGAAAGU--GGUUCUCAAU-UUUCAAUCGUUUUAAUUUUAUUGAACCUCUUCAAUUGUCAUGAAGUAAUCCG-UUUUUUCAAGUGCUUUUCAUUU ...............((((((.((((((..--(((((.....-......................))))).(((((.......))))).......-)))))).))))))......... ( -17.33, z-score = -0.77, R) >droEre2.scaffold_4784 9764340 98 + 25762168 UAACGCCCCUUAUAGGCGCUUUAGGAAAGU--GGUUC-----------------UUAAUUUUAUUGAACCUCUUAAGUAGCCAUUAGGUAAUUUG-UUUUUUCGAGUGCUUUUCAUUU .............((((((((.(((((((.--(((((-----------------...........))))).).(((((.(((....))).)))))-)))))).))))))))....... ( -21.70, z-score = -1.37, R) >droAna3.scaffold_13337 17977210 90 + 23293914 ------------UAAAAGCUUUAGGUGCUUAGGGUCCUUA---UCACAGCCAUUCAAAGUUUAUGGAACCCAAUUUGCAAUCAAAAAAUAAU----CUCUGUAUAGUGU--------- ------------...((((.......)))).((((((...---.....................)).)))).....................----.............--------- ( -10.16, z-score = 1.54, R) >consensus UAACGGUCCUUAUAUGCGCUUUAGGAAAGU__GGUUCUUAAC_UAAUCGUUAAAAUAAUUUUAUUGAACCUCUUCGGUAGCCAUAAAGUAAUUUG_UUUUUUCGAGUGCUUUUCAUUU ...............((((((.((((((....(((((............................))))).(((((.......)))))........)))))).))))))......... (-10.19 = -10.77 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:44 2011