| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,880,625 – 17,880,732 |
| Length | 107 |
| Max. P | 0.568723 |
| Location | 17,880,625 – 17,880,732 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 90.06 |
| Shannon entropy | 0.17869 |
| G+C content | 0.41289 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -19.94 |
| Energy contribution | -20.34 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17880625 107 - 24543557 CGACUGUGACGUCACGAAGCGUGCGCGAAAAAUAGUAGUAAAAGUUAUAGCUUACUGCUAUAAAACAGCAACAGAAAUAAUCGUGCAAAAGCAAAACCAACCGCCAU- .(((......))).....((.(((((((...(((((((((..(((....))))))))))))...........(....)..)))))))...))...............- ( -24.80, z-score = -2.01, R) >droEre2.scaffold_4784 9763750 108 + 25762168 CGACUGUGACGUCACGGAGCGUGCGCGAAAAAUAGUAGUAAAAGUUAUAGCUUACUGCUAUAAAACAGCAACAGAAAUAGUUGUGCAAAAGCAAAACCUACUGCCAUC ...(((((....))))).((.(((.......(((((((((..(((....))))))))))))......((((((....).))))))))...))................ ( -26.50, z-score = -1.41, R) >droYak2.chr3L 8025931 99 + 24197627 CGACUGUGACGUCACUAAGCGUGCGCGCAAAAUAGUACUAAAAGUUAUAGCUUACUGCUAUAAAACAGCAAC---------UUUGCAAAAGCAAAGCCUACUGCCAAU ....((((.((.(((.....)))))))))...(((((.......(((((((.....)))))))........(---------(((((....))))))..)))))..... ( -23.70, z-score = -0.87, R) >droSec1.super_0 9909939 107 - 21120651 CGACUGUGACGUCACGAAGCGUGCGCGUAAAAUAGUAGUAAAAGUUAUAGCUUACUGCUAUAAUACAGCAACAGAAAUAAUCGCGCAAAAGCAAAACCAACCGCCAU- .(((......))).....((.((((((((..(((((((((..(((....))))))))))))..))).......((.....)))))))...))...............- ( -26.50, z-score = -1.98, R) >droSim1.chr3L 17207781 107 - 22553184 CGACUGUGACGUCACGAAGCGUGCGCGAAAAAUAGUAGUAAAAAUUAUAGCUUACUGCUAUAAAACAGCAACAGAAAUAAUCGUGCAAAAGCAAAACCAACCGCCAU- .(((......))).....((.(((((((...((((((((((..........))))))))))...........(....)..)))))))...))...............- ( -23.90, z-score = -2.05, R) >consensus CGACUGUGACGUCACGAAGCGUGCGCGAAAAAUAGUAGUAAAAGUUAUAGCUUACUGCUAUAAAACAGCAACAGAAAUAAUCGUGCAAAAGCAAAACCAACCGCCAU_ .(((......))).....((.(((((((......((.((.....(((((((.....)))))))....)).))........)))))))...))................ (-19.94 = -20.34 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:43 2011