Locus 7851

Sequence ID dm3.chr3L
Location 17,854,655 – 17,854,736
Length 81
Max. P 0.989911
window10807

overview

Window 7

Location 17,854,655 – 17,854,736
Length 81
Sequences 5
Columns 82
Reading direction reverse
Mean pairwise identity 68.20
Shannon entropy 0.55113
G+C content 0.38602
Mean single sequence MFE -11.65
Consensus MFE -7.02
Energy contribution -6.34
Covariance contribution -0.68
Combinations/Pair 1.60
Mean z-score -1.87
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.39
SVM RNA-class probability 0.989911
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17854655 81 - 24543557
AAAUACCAAAUUCAG-ACCGAAUAACAGCAGCUACCCAGCUGCAACGAAAGAACAACUCCACAUCUUCACAUUUUUUUUUCG
.........((((..-...))))....((((((....))))))..((((((((.....................)))))))) ( -13.30, z-score =  -4.70, R)
>droYak2.chr3L 8006810 79 + 24197627
AAAGACCAGAUUCAG-ACUGAAUAUGAGCAGCAAUCCGGCUGCAACGCAAGGACAACUCCACAUCUUCACUAUCGUUCUA--
..(((...(((..((-..((((.(((.(((((......))))).......(((....))).))).)))))))))..))).-- ( -16.60, z-score =  -1.34, R)
>droSec1.super_0 9897525 79 - 21120651
AAAGACCAAAUUCAG-ACCGAAUAACAGCAGCAACCCAGCUGCAACGAAAGGAUAACUCCACAUCUUCACAAUCUUAUUG--
.((((....((((..-...))))....(((((......))))).......(((....)))............))))....-- ( -13.30, z-score =  -3.04, R)
>droSim1.chr3L 17194377 79 - 22553184
AAAGACCAAAUUCAG-ACCGAAUAACAGCAGCAACUCAGUUGCAACGAAAGGAUAACUCCACAUCUUCACAAUCUUUUUG--
.........((((..-...))))....(((((......)))))..(((((((((.................)))))))))-- ( -12.03, z-score =  -1.87, R)
>droMoj3.scaffold_6500 12948860 78 - 32352404
CAUUAUUUGAUUCAGCUCUCGAAAAGUAUAGCUUCGACAUUAUAAUUC-UCACUAAUUCCAAGGUUUUUUUUUUUUUUA---
......((((...((((..(.....)...))))))))...........-..............................--- (  -3.00, z-score =   1.62, R)
>consensus
AAAGACCAAAUUCAG_ACCGAAUAACAGCAGCAACCCAGCUGCAACGAAAGGAUAACUCCACAUCUUCACAAUCUUUUUG__
...........................(((((......)))))....................................... ( -7.02 =  -6.34 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:42 2011