Locus 7850

Sequence ID	dm3.chr3L
Location	17,853,804 – 17,853,894
Length	90
Max. P	0.915091

overview

Window 6

Location	17,853,804 – 17,853,894
Length	90
Sequences	4
Columns	91
Reading direction	forward
Mean pairwise identity	93.19
Shannon entropy	0.10906
G+C content	0.52366
Mean single sequence MFE	-26.56
Consensus MFE	-24.60
Energy contribution	-25.54
Covariance contribution	0.94
Combinations/Pair	1.08
Mean z-score	-1.82
Structure conservation index	0.93
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.24
SVM RNA-class probability	0.915091
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17853804 90 + 24543557
GCGCCCACACUGAA-GCCCGGUCUGGCAUCACGGCGAAAACAGGUACUAACGCCAAGACCUUUCCUGGAGGACGAUAUCUUCUGAUAUCGU
.((((.....(((.-(((......))).))).))))......(((......)))....((((.....))))((((((((....)))))))) ( -26.30, z-score =  -1.27, R)
>droSim1.chr3h_random 1339556 90 - 1452968
GCGCCCAGACUGAA-GCCCGGUCUGGCAUCACGGCGAAAACAGGUACUAACGCCAAGACCUUUCCUGGAAGACGAUAUCUUCUGAUAUCGU
..(((.((((((..-...))))))))).((.(((.(((...((((.((.......))))))))))))))..((((((((....)))))))) ( -29.80, z-score =  -2.62, R)
>droSec1.super_3 300125 90 - 7220098
GCGCCCAGACUAAA-GCCCGGUCUGGCAUCACGGCGAAAACAGGUACUAACGCCAAGACCUUACCUGGAGGACGAUAUCUUCUGAUAUCGU
..(((.(((((...-....)))))))).....((((..............))))....((((.....))))((((((((....)))))))) ( -28.04, z-score =  -2.06, R)
>droYak2.chr2L_random 3848368 91 - 4064425
GCGCCCAGACUAAAAGCCCAGUCUGGCAACACGGCGUAAUCAAGUACUAACGCCAAGACUUUUCCUGGAGGACAAUAUCUUCUGAUAUCGU
..(((.(((((........)))))))).....(((((............)))))............((((((.....))))))........ ( -22.10, z-score =  -1.31, R)
>consensus
GCGCCCAGACUAAA_GCCCGGUCUGGCAUCACGGCGAAAACAGGUACUAACGCCAAGACCUUUCCUGGAGGACGAUAUCUUCUGAUAUCGU
..(((.((((((......))))))))).....((((..............))))....((((.....))))((((((((....)))))))) (-24.60 = -25.54 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:41 2011