Locus 785

Sequence ID dm3.chr2L
Location 5,587,620 – 5,587,719
Length 99
Max. P 0.530492
window1064

overview

Window 4

Location 5,587,620 – 5,587,719
Length 99
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 81.34
Shannon entropy 0.31744
G+C content 0.58006
Mean single sequence MFE -37.60
Consensus MFE -26.38
Energy contribution -26.74
Covariance contribution 0.36
Combinations/Pair 1.25
Mean z-score -1.45
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.07
SVM RNA-class probability 0.530492
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 5587620 99 + 23011544
---GAUAAGGACGAUACGACGGGAUUCUUGCGCAGUGACUCCAACGGAUUCUUGCGCAGAGCUAUGCUGGCCUUCAUGGCCGCGUCUUGGAUGUGGCUCUCC
---.....(((.................(((((((.((.(((...))).)))))))))(((((((((.((((.....))))))(((...))))))))))))) ( -33.20, z-score =  -0.64, R)
>droSim1.chr2L 5382043 102 + 22036055
GAUAAGGAGGACGACACAACGGGAUUCUUGCGCAGUGACUCCAAGGGAUUCUUGCGCAGAGCUAUGCUGGCCUUCAUGGCCGCGUCCUGGAUGUGGCUCUCC
.....((((..(.(((...(((((((((.((((((.((.(((...))).))))))))))).....((.((((.....))))))))))))..))).)..)))) ( -43.10, z-score =  -2.66, R)
>droSec1.super_5 3665418 102 + 5866729
GAUAAGGAGGACGACACGACGGGAUUCUUGCGCAGUGACUCCAAGGGAUUCUUGCGAAGAGCUAUGCUGGCCUUCAUGGCCGCGUCCUGGAUGUGGCUCUCC
.....((((..(.(((...((((((((((.(((((.((.(((...))).))))))))))).....((.((((.....))))))))))))..))).)..)))) ( -40.90, z-score =  -2.14, R)
>droYak2.chr2L 8717476 90 - 22324452
------------GGCACCAGUGGAUUCUUGCGCAGAGACACCAGGGGACUCUUGCGCAGAGCGAGGCUGGCCUUCAUGGUCGCCUCUUGGAUGUGGUUCUCC
------------.(((((((..(.((((.((((((((...(....)..))).))))))))))(((((.((((.....))))))))))))).)))........ ( -34.20, z-score =  -0.13, R)
>droEre2.scaffold_4929 5673809 90 + 26641161
------------GAAACCAGGGGAUUCUUGCGCAGAGGCACCAGGGGGUUUUUGCGCAAAGCUAUGCUGGCCUUCAUGGCCGCCUCUUGGAUGUGAUUCUCC
------------....(((((((....((((((((((((.((...))))))))))))))......((.((((.....)))))))))))))............ ( -36.60, z-score =  -1.66, R)
>consensus
____A__AGGACGACACCACGGGAUUCUUGCGCAGUGACUCCAAGGGAUUCUUGCGCAGAGCUAUGCUGGCCUUCAUGGCCGCGUCUUGGAUGUGGCUCUCC
..............(((..(((((...((((((((.((.(((...))).)))))))))).....(((.((((.....))))))))))))...)))....... (-26.38 = -26.74 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:29 2011