| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,840,113 – 17,840,170 |
| Length | 57 |
| Max. P | 0.635862 |
| Location | 17,840,113 – 17,840,170 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.52765 |
| G+C content | 0.43528 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -8.12 |
| Energy contribution | -8.91 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17840113 57 - 24543557 ----------CAU-UCGAUAGUGGUCAUAUGA-UGGCCGCGAUGCUAUCGAUUGUUUUGGUGAUUUUCC ----------((.-((((((((((((((...)-))))).....)))))))).))............... ( -15.50, z-score = -1.34, R) >droAna3.scaffold_13337 17954229 57 + 23293914 ----------CA--GCGAUAACGGUCAUAUGAUUGGCUCCCAGCGAAUCGAUAGUAUUGGGAAUUUUCC ----------..--.(((((...(((....((((.((.....)).)))))))..)))))(((....))) ( -10.60, z-score = 0.29, R) >droEre2.scaffold_4784 9738102 57 + 25762168 ----------CAC-UCGAUAGUGGUCAUAUGA-UGGCCAGGGAGUUAUCGAUUGUCUUGGAGAUUUUCC ----------((.-((((((((((((((...)-)))))).....))))))).))....((((...)))) ( -12.70, z-score = 0.08, R) >droYak2.chr3L 7983839 57 + 24197627 ----------CAU-UCGAUAGUGGUCAUAUGA-UGGCCAGGGAGCUAUCGAUUGUUUUGGGAAUUUUCC ----------((.-((((((((((((((...)-))))).....)))))))).)).....(((....))) ( -15.90, z-score = -1.67, R) >droSec1.super_0 9885892 57 - 21120651 ----------CAU-UCGAUAGUGGUCAUAUGA-UGGCCACGGUGCUAUCGAUUGUUUUGGAAAUUUUCC ----------((.-((((((((((((((...)-))))).....)))))))).))....(((.....))) ( -15.90, z-score = -1.91, R) >droSim1.chr3L 17179345 57 - 22553184 ----------CAU-UCGAUAGUGGUCAUAUGA-UGGCCAGCGUGCUAUCGAUUGUUUUGGAAAUUUUCC ----------((.-((((((((((((((...)-))))).....)))))))).))....(((.....))) ( -15.90, z-score = -2.00, R) >droVir3.scaffold_13049 3063025 65 + 25233164 GACUGGCCAAUAUAUCGAUAGUGGCUGGA----UUUCGACGACAUUAUAUAUCGGGAUUGCGUUUAUUC ..(..((((.(((....))).))))..)(----(..(((............)))..))........... ( -13.10, z-score = -0.28, R) >consensus __________CAU_UCGAUAGUGGUCAUAUGA_UGGCCACGGUGCUAUCGAUUGUUUUGGAAAUUUUCC ..............(((((((((((((......))))).....)))))))).................. ( -8.12 = -8.91 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:41 2011