Locus 7847

Sequence ID dm3.chr3L
Location 17,802,004 – 17,802,100
Length 96
Max. P 0.889016
window10803

overview

Window 3

Location 17,802,004 – 17,802,100
Length 96
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 81.31
Shannon entropy 0.28755
G+C content 0.44777
Mean single sequence MFE -31.66
Consensus MFE -18.81
Energy contribution -20.93
Covariance contribution 2.12
Combinations/Pair 1.07
Mean z-score -2.52
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.09
SVM RNA-class probability 0.889016
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17802004 96 - 24543557
----------UAGAUGGAGCUGCUCGGUUAUUAAAUAAACUUGUUGCUUGUGGCUUCUAAUUCGGUUUGAUCGGUUUCAAAUCGAACGCCAAACGAUCGGUUUGGC
----------.....(((((..(..(((...(((......)))..))).)..)))))...((((((((((......)))))))))).(((((((.....))))))) ( -30.70, z-score =  -3.25, R)
>droSim1.chr3L 17142096 96 - 22553184
----------UAGACGGAGCUGCUCGGUUAUUACAUAAACUUGUUGCUUGUGGCUUCUAAUUCGGUUUGAUCGGUUUCAAAUCGGACGCCAAACGAUCGGUUUGGC
----------.....(((((..(..(((....(((......))).))).)..)))))...((((((((((......)))))))))).(((((((.....))))))) ( -32.50, z-score =  -3.34, R)
>droYak2.chr3L 7942735 106 + 24197627
GCGCAUACUUUUGGUGGAGGAGCUGGGUUAGUAAAUAAACUUGUUGCUAGUCGCUUCUAAUUCGGUUUGAUUGGUUUUAAAUCGAACGCCAAACGUUCGGCUUGGA
..((..((.(((((((.((((((..(..((((((.........))))))..)))))))..((((((((((......))))))))))))))))).))...))..... ( -33.80, z-score =  -2.66, R)
>droEre2.scaffold_4784 9701794 106 + 25762168
GCGCAUACUUUUGAUGGAGGAGCUCGGUUGGUAAAAAAACGUGUUGCUUGUGGCGUCUAAAUCGGUUUGAUCAGUUUCAAAUCGAACGCCAAACGUUGGGCUUGGG
((.((.((........(((.(((.((.............)).))).))).((((((.....(((((((((......)))))))))))))))...)))).))..... ( -29.62, z-score =  -0.84, R)
>consensus
__________UAGAUGGAGCAGCUCGGUUAGUAAAUAAACUUGUUGCUUGUGGCUUCUAAUUCGGUUUGAUCGGUUUCAAAUCGAACGCCAAACGAUCGGCUUGGC
...............((((((((..(((.................))).))))))))...((((((((((......)))))))))).(((((((.....))))))) (-18.81 = -20.93 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:39 2011