| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,795,351 – 17,795,405 |
| Length | 54 |
| Max. P | 0.922864 |
| Location | 17,795,351 – 17,795,405 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 63.33 |
| Shannon entropy | 0.66687 |
| G+C content | 0.47009 |
| Mean single sequence MFE | -13.78 |
| Consensus MFE | -7.18 |
| Energy contribution | -8.98 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17795351 54 - 24543557 UUUUGCGUUGACUCGCAUGUAUUUUGUUGCUAGUGCAGUACGGUCUCGCGCAAU ..((((((.(((.((..((((((........))))))...)))))..)))))). ( -16.50, z-score = -1.51, R) >droGri2.scaffold_15110 24306596 52 - 24565398 AGUCACAACGACUCGGUCACAGCUAC--GUCAACGUUGCUCAACUCUAUUGAAU ((((.....)))).(((...(((.((--(....))).)))..)))......... ( -8.00, z-score = -0.25, R) >droSec1.super_0 9841977 54 - 21120651 UUUUGCGUGGACUCGAAUGUAUUUUGUGGCUAGUUCAGUACGGUCUCGCGCGAU ..((((((((((.((..((.(((........))).))...))))).))))))). ( -15.00, z-score = -1.03, R) >droSim1.chr3L 17135425 54 - 22553184 UUUUGCGUGGACUCGCAUGUAUUUUGUGGCUAGUUCAGUACGGUCUCGCGCGAU ..(((((((((((((((.......))))(((.....)))..)))).))))))). ( -16.70, z-score = -1.46, R) >droYak2.chr3L 7935550 54 + 24197627 UAUUGCAUGGACUUGCAUUUAUUCUCUAGCUGGUGCGGUAAGGUCUCACGCAAU .(((((.((((((((((((............))))))....)))).)).))))) ( -12.70, z-score = -0.88, R) >consensus UUUUGCGUGGACUCGCAUGUAUUUUGUGGCUAGUGCAGUACGGUCUCGCGCAAU ..(((((((((((....((((((........))))))....)))).))))))). ( -7.18 = -8.98 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:38 2011