| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,776,935 – 17,777,056 |
| Length | 121 |
| Max. P | 0.566119 |
| Location | 17,776,935 – 17,777,056 |
|---|---|
| Length | 121 |
| Sequences | 9 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 82.09 |
| Shannon entropy | 0.36190 |
| G+C content | 0.42432 |
| Mean single sequence MFE | -33.69 |
| Consensus MFE | -17.47 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17776935 121 + 24543557 --GAGCAUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAAC-GGAUGAAGAAGUUGCA---GAAUAACUA----AGCUGCAGCAGCUCAUACGACUUUCAUACAUGUACAUACAUAA --(.(((((((((.(((((...(((((....)).)))...))))).------........(-(.((((.(..((((((---(........----..)))))))..))))).)).....))))))))).)........ ( -34.30, z-score = -1.80, R) >droEre2.scaffold_4784 9678501 121 - 25762168 --GAGCAUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAAC-GGAUGAAGAAGUUGCA---GAAUAACUA----AGCUGCAGCAGCUCAUACGACUUUCAUACAUGUACAUACAUAA --(.(((((((((.(((((...(((((....)).)))...))))).------........(-(.((((.(..((((((---(........----..)))))))..))))).)).....))))))))).)........ ( -34.30, z-score = -1.80, R) >droYak2.chr3L 7918582 121 - 24197627 --GAGCAUGUGUGCGUGGAAAAGCAGCUUUAGCAUGCACAUUCGCA------UAAGGAAAC-GGAUGAAGAAGUUGCA---GAAUAACUA----AGCUGCAGCAGCUCAUACGACUUGCAUACAUGUACGUACAUAG --.....((((((((((.(...(((((((.....((((..(((.((------(..(....)-..)))..)))..))))---........)----)))))).((((.((....)).)))).....).)))))))))). ( -39.42, z-score = -2.59, R) >droSec1.super_0 9823952 122 + 21120651 --GAGCAUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAACCGGAUGAAGAAGUUGCA---GAAUAACUA----AGCUGCAGCAGCUCAUACGACUUUCAUACAUGUACAUACAUAA --(.(((((((((.(((((...(((((....)).)))...))))).------...(....)((.((((.(..((((((---(........----..)))))))..))))).)).....))))))))).)........ ( -34.50, z-score = -1.81, R) >droSim1.chr3L 17114453 122 + 22553184 --GAGCAUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAACCGGAUGAAGAAGUUGCA---GAAUAACUA----AGCUGCAGCAGCUCAUAAGACUUUCAUACAUGUACAUACAUAA --.....((((((((((..((((...(((((((.....((((((..------...(....))))))).....((((((---(........----..))))))).)))..)))).))))....))))))))))..... ( -33.70, z-score = -1.71, R) >dp4.chrXR_group6 9570436 121 - 13314419 --CCGGUUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAAC-GGAUGAAGAAGUUGCA---GAAUAAGUA----AGCUGCACCAGCUCAUACGAAUUUCAUAUACGAGUAUACUCGU --....(((((((.((((....((((((((....((((..(((.((------(..(....)-..)))..)))..))))---.......))----)))))).))).).))))))).........(((((....))))) ( -37.50, z-score = -2.80, R) >droPer1.super_9 1599793 121 - 3637205 --CCGGUUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAAC-GGAUGAAGAAGUUGCA---GAAUAAGUA----AGCUGCACCAGCUCAUACGAAUUUCAUAUACGAGUAUACUCGU --....(((((((.((((....((((((((....((((..(((.((------(..(....)-..)))..)))..))))---.......))----)))))).))).).))))))).........(((((....))))) ( -37.50, z-score = -2.80, R) >droAna3.scaffold_13337 14474344 122 + 23293914 GCUGGGGGGCGCCAGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA------UAAGGAAAC-GGAUGAAGAAGUUGCACAAGAAUAAGUACAUAAGCUGCAGCAACUCAUACGAGUUUUAUAUAGAAAG-------- (((((......)))))......((((((((.....(((..(((.((------(..(....)-..)))..)))..)))((........))...))))))))...(((((....)))))............-------- ( -31.00, z-score = -1.70, R) >droVir3.scaffold_13049 18572577 120 - 25233164 --GAGAGAGAGUGUGAGCACAAGCAGCUUUAGCAUGCACACACACACACAAAUAAGGAAAC-GGAUAAAGAAGUUGUA-------AAAUA----AGUUGCACGAACUCAUGUGAGUUUCAUAAAUUAUACAAAA--- --....(((((((((.(((...((.......)).))).)))))...((((.....(....)-.......((.((((((-------(....----..)))))...)))).))))..))))...............--- ( -21.00, z-score = -0.50, R) >consensus __GAGCAUGUGUGCGUGGAAAAGCAGCUUAAGCAUGCACAUUCGCA______UAAGGAAAC_GGAUGAAGAAGUUGCA___GAAUAACUA____AGCUGCAGCAGCUCAUACGACUUUCAUACAUGUACAUACAUAA .........((((.((((((..(((((((...(((((......))..........(....)...)))...))))))).................(((((...)))))........)))))).))))........... (-17.47 = -18.10 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:37 2011